Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0029 ATGGTGCTGAATGAAAGGCCGTCAAAGCGGATGAAGAGGAGAGTCTCCGCCGATCTTTATGATTTTCTCACTTTTCCGGCCGCCGGTGACCGCTTCTGTGACGATGTGGTTGGTGGCGGTCAACCGTTCCGGAAAACCGTTCAGCGGTTTCTTACTAATTATGCGATGGTCACATATCCCCCGTCGTTATTTTCCTCGTTGATGACGTGGCAGATATTGTTCCGGATCGGAGAACTCGTCGATGGGTCCGATCTTTCGCCAGCGATTGTCACTGTCGACATTGTGGAGGAGGACGTAACTCGATCTCGAGCCTCAGTCTACTGTGATCAGTGCCGAGTTGTTGGATGGAGTGGCCATCCGGTATGCCGAAAGCGATATCACTTCATTATCCGAGCTTCAAGTAATCACATGGATGCATATGAAAGACCTTGTTCATTATGTGGGAAATCTACCCAATTATCGGAAGCAAGGTGTAAATGGTGTGACGCTGTGATTACTGTTGAAGATCTTGAGGATTGGGTGTATAGTCAAATTGAAGATAACACTCATCTTCTGCACGGGATTGTCCACTCCAATGGTTATGGCCATTTGCTTACTCTTAATGGAAGAGAGGGTGGTTCGAAGCTTCTCTCTGGGTCTGACATAATGAGTTTCTGGGATAGGCTTTGTGTTGCACTTGCTGTTAGGAAGGTTAGTGTGATGGATTTGTCAAAGAAATTTGGGATGGAATATCGATTGCTTCATGCAATCACCTATGGGTGTTCTTGGCTTGAAACCTTGAATGTTACGGAAAATGAAGTTAGCGCAAATTCAGGATATCCATCAAAAGAGCAAGTGATTGTGGATTTGAAATTCTTGTTTGATTCGATCATTCATCCTGAAAAGATGGTGAGCTACAGACCTAAGATTATGGGGAAGCGGGTGGCTGATTCGGCGAGGAAGCTCCTCGACTGCAAGCAGTTCATGAAGGATTATAAGCCTGATAGGATGGCAGGTGGACTGGTGCCTCCATGTATTAGGCTGTGGTGTGATGTGGAGCTTTACGATCAGCCAAAAGATGATCCAACTCCTCCTCCAGAACTGGTTTTGCTGCCCTTGAACGCGACTGTAGCTGACCTCAAGAATGAGGCGACTAATACTTTTCAAGAAGTGTACGCCATGTACAAGAGGTTTCAAGCCGAGGAACTTCTGGAATATGGGCCTATCAAGGACAATCTCACTGTAAAGTTGCTACTTGGAACAAGTGGGTCTGTCCGAATTTTAGGCAAGTGCCCGGTAAAACATGGCCTAAACCGCTTCCGAATGGAGAGAGGAACAGAGACGTGGAAAGTTGATTGCCCCTGTGGGGCTAAGGATGATGATGGGGAGAAGATGTTAGCATGTGACACTTGCGGTATCTGGCAACATACCAGGTGTGCTGGAATTGATAATTCCAATGTTGTTCCTTCTAAGTTCGTTTGCATGAGATGCATCAAACCATACCGAAGGGAGGCCAAGAAACAGCCTGACTATGTTGAGCCAAAATTCCAACCTATGGATGAACCAAAAAACGACAATGTGGAAGAAACAAATGTAACTTGTAAAAAGAACAACTCGGTGGAGGAAGCAAGAACCCCCAGTAAAGGAAAGACGTCGTGTAGGGGTGAGGTGGTGGCAGCAGACAATCCTGCAGTTGCTTGCAACCTGGCTCTGAATTTTGGTGTACGTTGA 1710 0.4637 MVLNERPSKRMKRRVSADLYDFLTFPAAGDRFCDDVVGGGQPFRKTVQRFLTNYAMVTYPPSLFSSLMTWQILFRIGELVDGSDLSPAIVTVDIVEEDVTRSRASVYCDQCRVVGWSGHPVCRKRYHFIIRASSNHMDAYERPCSLCGKSTQLSEARCKWCDAVITVEDLEDWVYSQIEDNTHLLHGIVHSNGYGHLLTLNGREGGSKLLSGSDIMSFWDRLCVALAVRKVSVMDLSKKFGMEYRLLHAITYGCSWLETLNVTENEVSANSGYPSKEQVIVDLKFLFDSIIHPEKMVSYRPKIMGKRVADSARKLLDCKQFMKDYKPDRMAGGLVPPCIRLWCDVELYDQPKDDPTPPPELVLLPLNATVADLKNEATNTFQEVYAMYKRFQAEELLEYGPIKDNLTVKLLLGTSGSVRILGKCPVKHGLNRFRMERGTETWKVDCPCGAKDDDGEKMLACDTCGIWQHTRCAGIDNSNVVPSKFVCMRCIKPYRREAKKQPDYVEPKFQPMDEPKNDNVEETNVTCKKNNSVEEARTPSKGKTSCRGEVVAADNPAVACNLALNFGVR 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0029 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 495 IPR013083 -
Lele09g0029 569 SMART PHD_3 445 491 IPR001965 -
Lele09g0029 569 CDD PHD_MMD1_like 445 490 - -
Lele09g0029 569 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 256 - -
Lele09g0029 569 SUPERFAMILY FYVE/PHD zinc finger 436 492 IPR011011 -
Lele09g0029 569 Pfam PHD-finger 446 491 IPR019787 -
Lele09g0029 569 ProSitePatterns Zinc finger PHD-type signature. 446 490 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0029 Lele-ChrLele09 197854 200829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0029 275 490 PHD Transcription Factor Family AT5G22260 23.451 3.27e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele09g0029 PHD 5e-09 CL0390