Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2740 ATGTCGTCTGACTCTGATGCCACCTTCCCCAATTCGTCGTCATCTTCGACACCATTGCAATTGGACGATCCCCAAATTCGAAGATTGTCTATGATTGTCCCTCTGCTTTTCAGTTTAGCACGGCCTCGCCAGACCCCGGAATTCGATTCCATTAGCCACCGTGGTCAAGTCCGGATCATCATAGTTGACCCTTCAGCTAGAGCCATGATCGTGATCGAAGGCTCCGGAGATCTTCAATCCGTGCTTCAAGGCCTATCGGGGAAGCCCGGAGTGCTGCCGGCGTCCAAAGATTCGATTCATGCTATGCCCAGAGTGGTGGTGACGGAAGAAGGCGCGGATTGTCCGATCTGCTTGGAAGCTTACGAAGTGGGCGGCGAAGCTAGGGAAATGCCTTGTAAGCATAAATTCCACTCGGAGTGTATTGAGAAGTGGTTAGGGCTTCACGGGTCCTGCCCAATCTGCCGATATGCCATGCCGGCGGAGGAGGAAAACACCAGTATCGCCATCATGGGCAGCGAGGGCGAGCAAGATGGTGGCGAGAGGAGTGAGAGCGGTGAGGGGTTGATATCCGTGAGTGTATGGGTGAGGTCGCTGGAAGAAGATGAAGATGACGACGACGACGATCAGATGGAAGTGGATTCAGAGTCGGATCATGTAACCGGGGGATCCAATAGTGATTCACGAGAAGGGAATTCTGCAGGGGATGAAGACTCGTGGATGATGATGGATCACGAGGCACAAGACATGGAATTCTGA 756 0.5304 MSSDSDATFPNSSSSSTPLQLDDPQIRRLSMIVPLLFSLARPRQTPEFDSISHRGQVRIIIVDPSARAMIVIEGSGDLQSVLQGLSGKPGVLPASKDSIHAMPRVVVTEEGADCPICLEAYEVGGEAREMPCKHKFHSECIEKWLGLHGSCPICRYAMPAEEENTSIAIMGSEGEQDGGERSESGEGLISVSVWVRSLEEDEDDDDDDQMEVDSESDHVTGGSNSDSREGNSAGDEDSWMMMDHEAQDMEF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2740 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 161 IPR013083 -
Lele08g2740 251 Pfam Ring finger domain 113 155 IPR001841 -
Lele08g2740 251 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Lele08g2740 251 MobiDBLite consensus disorder prediction 1 21 - -
Lele08g2740 251 SMART ring_2 114 154 IPR001841 -
Lele08g2740 251 MobiDBLite consensus disorder prediction 198 213 - -
Lele08g2740 251 MobiDBLite consensus disorder prediction 230 251 - -
Lele08g2740 251 SUPERFAMILY RING/U-box 108 160 - -
Lele08g2740 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 50 159 - -
Lele08g2740 251 CDD RING-H2_PA-TM-RING 113 155 - -
Lele08g2740 251 FunFam E3 ubiquitin-protein ligase RNF181 83 161 - -
Lele08g2740 251 MobiDBLite consensus disorder prediction 194 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2740 Lele-ChrLele08 32800259 32801014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2740 1 196 C3H Transcription Factor Family AT1G26800 36.364 1.16e-34 122