Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2735 ATGAAGGTAGGGGAGTGTCCTATCACCTATGAAACAAAAATGGGTCTTGTTCCTATCGGCTTTCTTTTTCTTCTGGGATTTGTCTCCTCTGTCCATGGCTACGGAGGCTGGAACAAGGCTCATGCAACTTTCTATGGGGGCAGTGATGCTTCAGGAACTATGGGAGGGGCTTGTGGGTATGGAAATCTTTACAGTCAAGGGTATGGGACAAACACAGCAGCTGTGAGCAGTGCTCTGTTTGAGAATGGACTGAACTGTGGGGCATGTTATCAGATAAGATGTGTGAATGATCCACAATGGTGTCTACCAGGAACTATTGTGGTCACTGCCACTAATTTTTGCCCACCAGGTGGTTGGTGTGACCCTCCCAACCTCCATTTTGATCTTTCCCAACCTGTTTTCCAGCACATTGCTCAGTACAAAGCGGGCATTGTTCCTGTCAGTTACAGAAGGGTAAGGTGTGGGAGAAGAGGAGGGATAAGATTCACCATCAATGGACATTCATACTTCAATTTAGTGCTGGTTACAAACGTTGGAGGAGCTGGAGATGTGCATGCAGTGGCAATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCCAGAAACTGGGGCCAAAACTGGCAGAGCAATTCTTACCTCAATGGTCAGGCCCTTTCCTTCTTGGTCACCACCAGTGACGGTCGCTCTCTCGTCTCTTACAACGTTGCCCCACCGTCTTGGTCCTTTGGCCAGACCTACACTGGACGCCAATTTCGATACTGA 762 0.4843 MKVGECPITYETKMGLVPIGFLFLLGFVSSVHGYGGWNKAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAAVSSALFENGLNCGACYQIRCVNDPQWCLPGTIVVTATNFCPPGGWCDPPNLHFDLSQPVFQHIAQYKAGIVPVSYRRVRCGRRGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQALSFLVTTSDGRSLVSYNVAPPSWSFGQTYTGRQFRY 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2735 253 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Lele08g2735 253 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Lele08g2735 253 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Lele08g2735 253 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Lele08g2735 253 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Lele08g2735 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Lele08g2735 253 FunFam Expansin 159 251 - -
Lele08g2735 253 Pfam Lytic transglycolase 72 149 IPR009009 -
Lele08g2735 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 159 IPR007112 -
Lele08g2735 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Lele08g2735 253 Gene3D - 158 251 IPR036749 -
Lele08g2735 253 SMART dpbb_1 72 149 IPR007112 -
Lele08g2735 253 Gene3D - 26 154 IPR036908 -
Lele08g2735 253 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Lele08g2735 253 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Lele08g2735 253 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Lele08g2735 253 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Lele08g2735 253 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Lele08g2735 253 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Lele08g2735 253 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Lele08g2735 253 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Lele08g2735 253 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Lele08g2735 253 PRINTS Expansin signature 94 105 IPR002963 GO:0009664
Lele08g2735 253 PANTHER EXPANSIN-A15 30 251 IPR002963 GO:0009664
Lele08g2735 253 SUPERFAMILY Barwin-like endoglucanases 23 177 IPR036908 -
Lele08g2735 253 Pfam Expansin C-terminal domain 160 237 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2735 Lele-ChrLele08 32782294 32785071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2735 10 252 Expansin Gene Family AT2G03090 76.587 3.11e-140 392