Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2729 ATGGAGATTCCCCCAGCTGGAGTAAGAAAAGGCATGTGGTCTAAAGAAGAAGACGATCTCCTAAGAGCATGCGTCCAACGTTATGGTGATGGCAAGTGGCGCCTCGTTCCTCAAAGAGCTGGGTTGAATAGATGCCGGAAAAGTTGTAGGCTGAGGTGGATCAACTACTTAAAGCCAGACATCAAGAGAGGAAACTTTGCTGAGGATGAAGCTGATATGATAATGAGGTTCCATAGACTCTTGGGAAACAGATGGTCGCTGATTGCTGCGAGGTTTCCAGGAAGAACATCGAATGACGTGAAAAATTACTGGAACACGAACATACGTAAGAGGCTGCAATGCTCTTCCTCTTCCTCGCAAGAAGCAACCATGAAAACCCAGAAAGTAATAAGGCCCCAACCCCTAAGTTTCTCCAGAAAGAAGAGAAAGGGATTATTATTAGCTGATAAAAGCGATTGCAGAGACAAGCCTGTAATCGCCACTGCTAGTGACAGTGGTGACGTGGCGGTGGTGGTCGGTCCAGATTCATCAGCAAAAGAATCAGAGAAGGAGAAGGAGTGGTGGCAAAGTTTGCTCGATGACGTCATCGTCAACAAAGACAGCTTATGGCTTTTGGGCGGAGAGGAACAGGATAAGTTTCTGCAGCCTCAATTCTGGGACGACCACGACGACCAACAGCAATTCCATTTCTTTCAATGA 699 0.4678 MEIPPAGVRKGMWSKEEDDLLRACVQRYGDGKWRLVPQRAGLNRCRKSCRLRWINYLKPDIKRGNFAEDEADMIMRFHRLLGNRWSLIAARFPGRTSNDVKNYWNTNIRKRLQCSSSSSQEATMKTQKVIRPQPLSFSRKKRKGLLLADKSDCRDKPVIATASDSGDVAVVVGPDSSAKESEKEKEWWQSLLDDVIVNKDSLWLLGGEEQDKFLQPQFWDDHDDQQQFHFFQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2729 232 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 159 - -
Lele08g2729 232 Gene3D - 65 133 - -
Lele08g2729 232 SMART sant 9 59 IPR001005 -
Lele08g2729 232 SMART sant 62 110 IPR001005 -
Lele08g2729 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 61 IPR017930 -
Lele08g2729 232 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lele08g2729 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Lele08g2729 232 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Lele08g2729 232 CDD SANT 13 57 IPR001005 -
Lele08g2729 232 FunFam Myb transcription factor 10 62 - -
Lele08g2729 232 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Lele08g2729 232 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Lele08g2729 232 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Lele08g2729 232 Gene3D - 10 62 - -
Lele08g2729 232 CDD SANT 65 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2729 Lele-ChrLele08 32735200 32736521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2729 5 159 MYB Transcription Factor Family AT1G66370 52.727 7.67e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele08g2729 Myb_DNA-binding 1e-15 CL0123