Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2724 ATGATGCAAGATCTCATCTTCAATTTGAGAATGGATGGTTCAACTGGCCGTGCCAGCAGTGCAGATGTGTTTTTACCAAATTATAAGTTGGGGAAAACACTTAGCATTGGATCCTTTGGCAAGGTGAAAATTGCAGAGCATATATTGACTGGCCATAAAGTTGCCATTAAGATCCTTAATCGGCGCAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCACCCTCACATTATACGACTTTATGAGGTCATTGAAACCCCAACGGACATATATGTTGTTATGGAGTATGTAAAATCCGGTGAACTCTTTGATTACATTGTGGAAAAGGGTAGGCTGCAAGAACATGAAGGCCGCAATTTTTTCCAGCAGATGATTTCTGGTGTGGAGTACTGTCACAGAAATATGGTGGCTCATAGAGACCTTAAGCCAGAGAATTTACTTTTAGATTCCAAATGCAATGTTAAAATTGCTGATTTTGGTTTGAGCAATATCATGCGCGATGGTCACTTTCTTAAGACAAGTTGCGGAAGCCCAAACTATGCTGCTCCAGAGGTTATATCTGGAAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGTTGTGGTGTAATTTTATATGCTCTTCTCTGTGGTACCCTTCCTTTTGACGATGAGAACATTCCAAACCTTTTTAAGAAAATAAAGGATGGGATTTATACTCTTCCTAGTCATCTATCACCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTGGTTGATCCTATGAAGAGAATGACCATACCTGAGATTCGCCAACATCCATGGTTCCAAGCTCACCTCCCTCGTTATTTAGCTGTGCCTCCACCAGATACAATGCAACAAGCAAAAAAGGTTTATTTTTCCTACAGTGTTTTTGATATCTGCTTCTATGTTGATTCTTTTCCAAGTCAGATTGATGAGGAACTTCTTCAGGAAGTGGTTAACATGGGATTTGATAGGAATCAACTGGTTGAATATCTCCGGAACCGGATACAAAATGAGGGTACTGTAGCATACTATTTGTTGTTGGACAATCGGTTCCATGTTTCCAGTGGCTATCTTGGAGCTGAATTCCAAGAGACAATGGCTGGAGTTTGTTTCTTATGGATGATGCAAATCATTGAACTTGGAGCTACTGCCCCAGTTGTTGGTCACCGCCTTCCAGGGTTTGTGGATTATCCAGTAGCAGCATTAAGATCCCAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGTGCTCATCCTCGTGAAATAATGACCGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTGTGTTGGAAAAAGATTGGACCTTACAACATGAAGTGCAGATGGGTTGCTGGCAATCCTGGTCATGACGGAATGGTAGACAATACTTGTGGTAGTCATTACTACAGAGATGATGCCACCATCATTGAGAACAATTCTGTTTCTAAGCCAAATGTGGTCAAGTTTGAACTTCAGCTTTACAAAACTCGGGAGGAGAAATATCTGCTCGATCTTCAACGGGTCCTGGGCCCACATTTTCTGTTTTTGGATTTTTGTGCTGCTTTCCTTGCACAGCTTCGTGTGCTCTAA 1638 0.4127 MMQDLIFNLRMDGSTGRASSADVFLPNYKLGKTLSIGSFGKVKIAEHILTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEHEGRNFFQQMISGVEYCHRNMVAHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKDGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKVYFSYSVFDICFYVDSFPSQIDEELLQEVVNMGFDRNQLVEYLRNRIQNEGTVAYYLLLDNRFHVSSGYLGAEFQETMAGVCFLWMMQIIELGATAPVVGHRLPGFVDYPVAALRSQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGPYNMKCRWVAGNPGHDGMVDNTCGSHYYRDDATIIENNSVSKPNVVKFELQLYKTREEKYLLDLQRVLGPHFLFLDFCAAFLAQLRVL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2724 545 CDD AMPKA_C 422 542 - -
Lele08g2724 545 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 321 361 IPR015940 -
Lele08g2724 545 SUPERFAMILY KA1-like 357 544 IPR028375 -
Lele08g2724 545 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 496 544 IPR001772 -
Lele08g2724 545 Gene3D Phosphorylase Kinase; domain 1 18 107 - -
Lele08g2724 545 SMART serkin_6 28 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g2724 545 Gene3D Kinase associated domain 1, KA1 428 543 - -
Lele08g2724 545 Pfam Protein kinase domain 28 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g2724 545 ProSiteProfiles Protein kinase domain profile. 28 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g2724 545 FunFam Non-specific serine/threonine protein kinase 428 543 - -
Lele08g2724 545 Pfam Kinase associated domain 1 502 544 IPR001772 -
Lele08g2724 545 CDD STKc_AMPK_alpha 25 280 - -
Lele08g2724 545 FunFam Non-specific serine/threonine protein kinase 19 378 - -
Lele08g2724 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Lele08g2724 545 FunFam Non-specific serine/threonine protein kinase 17 107 - -
Lele08g2724 545 SMART uba_6 323 360 IPR015940 -
Lele08g2724 545 Gene3D - 318 363 - -
Lele08g2724 545 CDD UBA_SnRK1_plant 322 362 - -
Lele08g2724 545 Gene3D Transferase(Phosphotransferase) domain 1 108 304 - -
Lele08g2724 545 Pfam UBA/TS-N domain 322 358 IPR015940 -
Lele08g2724 545 PANTHER SERINE/THREONINE KINASE 27 365 - -
Lele08g2724 545 SUPERFAMILY Protein kinase-like (PK-like) 24 308 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2724 Lele-ChrLele08 32694503 32700506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2724 28 280 CBL-interacting serine-threonine protein kinases AT4G24400 51.969 1.55e-91 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Lele08g2724 Pkinase 7.6e-78 CL0016