Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2722 ATGGAGAGCACCGAAAAAGTGAACTTTTCTGAATCCTTGTCTGAGCTAATTGGTTTGGCTGATGAGGTTATTTCCTCTGCTCAGAACTGTGAAACTGAAAAGAATGCTTTTGCTGAGTTCGCCATGTTAGTAGAGGAATTTGTACCAATCTTCAGTGATTTGAGAGACAAAAGCACGGTCATGGACAAGCCACCTATTAGAAAATCGTTGGAATCTCTTCAGAATGAGCTTAGGCGTGCTAAGGCTTTGACAAAAAGCCTTAATCAGAAACATCTTATTAAACAGATTGAGGACATAACTCATGATCTTGGTCGATCATTGGGACTGCTGCTTGTGTCCAGCCTTGAAGTGTCCACTGATTCTAGAGATAAGATTAGTGCATTGCAGAGAAAGTTGATGGGTGCACGATTTGGTGGAAATACGAGTTCAACTTCGAGTCCGAGATCAGAGTTTGTCAGTGATGTGAAGCTTGAAGGGGAAATAGAAGAAGAAATAGTTGACTTCACTATTGACGATGTTATGTTGCAACTTAAACATGGTAATGATGAAGAATTCACAGTTGCACTTTTGAGGCTAAAGGAGTTTATCAGAGATGAGAAAGCAAATTATGATTTAATTAACGAGGAAGTGCTCGTTGCCATTCTAATGAATCGACTAGGTTCAAGTAAGGCTGACAATAGGCTGACCATCCTTCAATTTCTAAGAAGCATTGCTTTTGGCAATGATGAAAAGAAGGAGAAGATGGCAGATATTGAGTTTTTATCAACTGTGGTGAAGTCTCTATCAAGGGAAGCGGAAGAAAGGAGAGAAGCAGTGGGGCTTTTACTAGACCTCTCTAACCTTCCTTCAGTTAAGCGACGAATAGGAAGAATTCAAGGGTGTATCGTTATGCTGGTCTCTATTCTTAATGGAGATGATCCTGTTGCTTCACATGATTCCGCAAAGTTGTTGGATACATTGTCTAGTAATTCTCAAAATGCTCTTCATATGGCAGAGGCCGGTTACTTTAAGCCACTAGTGCAGTGTTTGAAGGAAGGGTCTGACATGACCAAGATACTCATGGCAACAGCGCTGTCCAGATTGGAGCTCACTGATCACAGCAAATCCGCACTTGGAGAAGATGGGGTGATTGAGCCTTTAGTCCACATGTTTACAACTGGGAAGCTTGAGTCCAAGTTATCAGCTCTAAATGCACTGCAAAATTTGTCGAGCTTGACAGAAAATGCGCAACGTTTGATCAGATCTGGAATCGTGGTATCTCTGCTTCAACTTCTTTTCTCTGTAACATCCGTGCTCATGACTCTTCGAGAGCCTGTATCGGCTATTCTTGCAAGAATTGCTAAGTCAGAGCCCTTGCTTATTAATCCAGAAGCGGCTCAGCAGATGCTCTCACTTTTGAATCTTTCCAGCCCAATAATTCAGATTCATCTATTAGAAGCACTAGATAGCATCGCTGCTCATCCGGGCGCCTCGAAAGTGAGAAAAAAAATGAAGGAAAAAGGCGCACTTCAGCTTCTTTTACCTTTCTTGATGGAAACCAACACCAAAATCCAGTGCAAGGCCTTGCAATTTCTGTACACTCTCTCCAAAGATCTAACAGAAGAGTTGACAGAACATCTTGATGATACCCATCTGTTTAAAATTGTCAATATTATCTCATCATCAACATCTGAGAGTGAAAAGGCTGTTGCTGTTGGTTTACTGAGTAATCTTCCCATTAGTGATAAGAAAGTGACAGATGTACTAAAGAGGGCAAATTTGCTCCCTATTTTAACATCCATTATGTCTTCAAGCACAGGAAGTAATTCAACCACGACAAGTTGCCTATTGCAGAATGTTGTGGGTGTTACAATCCGCTTCACGAATCCTTCTGACAAGAAGCTACAACTTCTCTCAGCAGAACACGGTGTAATTCCTTTGCTCGTAAAACTGCTCTCAACTGGCTCACCGATCACAAAATCCAGGGCTGCAACCTCACTTGCTCAATTATCCCAGAATTCTATGTCTCTTGGGAGATCTAGAAAATCAAGATGGTTTTGTGTTCCTCCCTCGGCAGATGCCCATTGTGAAGTTCATGACAGTAATTGCTTAGTGAAAAGCACATTTTGTTTAGTCAAAGCTGGCGCGGTTCCTCCACTCATCCAAATATTAGAAGATAAAGAGAAGGAAGCCGTTGAAGCTTCTTTGATCGCACTCTCAACTCTATTACAAGATGAAATATGGGAAGGCGGTGTCAACTGCATAGCTAAATCCTCAGGTGTTCAGGCTATTATAAAAGTTTTAGAAGTGGGGGATGTAAAGATCCAAGAGAAAGCACTTTGGATATTGGAGAGAATATTCAGGGTTGAAGAACATAGAGTTAAATTTGGAGAATCTGCTCAGGTTTTTCTTATTGATCTCGCACAGAAGAGTGATTCTAGATTGAAGTCAGCAGTTGCAAAAGTATTAGCTGAGCTAGAACTCTTGCAAGCTCAATCAACTTACTTCTAA 2490 0.412 MESTEKVNFSESLSELIGLADEVISSAQNCETEKNAFAEFAMLVEEFVPIFSDLRDKSTVMDKPPIRKSLESLQNELRRAKALTKSLNQKHLIKQIEDITHDLGRSLGLLLVSSLEVSTDSRDKISALQRKLMGARFGGNTSSTSSPRSEFVSDVKLEGEIEEEIVDFTIDDVMLQLKHGNDEEFTVALLRLKEFIRDEKANYDLINEEVLVAILMNRLGSSKADNRLTILQFLRSIAFGNDEKKEKMADIEFLSTVVKSLSREAEERREAVGLLLDLSNLPSVKRRIGRIQGCIVMLVSILNGDDPVASHDSAKLLDTLSSNSQNALHMAEAGYFKPLVQCLKEGSDMTKILMATALSRLELTDHSKSALGEDGVIEPLVHMFTTGKLESKLSALNALQNLSSLTENAQRLIRSGIVVSLLQLLFSVTSVLMTLREPVSAILARIAKSEPLLINPEAAQQMLSLLNLSSPIIQIHLLEALDSIAAHPGASKVRKKMKEKGALQLLLPFLMETNTKIQCKALQFLYTLSKDLTEELTEHLDDTHLFKIVNIISSSTSESEKAVAVGLLSNLPISDKKVTDVLKRANLLPILTSIMSSSTGSNSTTTSCLLQNVVGVTIRFTNPSDKKLQLLSAEHGVIPLLVKLLSTGSPITKSRAATSLAQLSQNSMSLGRSRKSRWFCVPPSADAHCEVHDSNCLVKSTFCLVKAGAVPPLIQILEDKEKEAVEASLIALSTLLQDEIWEGGVNCIAKSSGVQAIIKVLEVGDVKIQEKALWILERIFRVEEHRVKFGESAQVFLIDLAQKSDSRLKSAVAKVLAELELLQAQSTYF 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2722 829 Gene3D - 689 824 IPR011989 -
Lele08g2722 829 Gene3D - 8 101 IPR036537 GO:0007166
Lele08g2722 829 SUPERFAMILY ARM repeat 170 425 IPR016024 -
Lele08g2722 829 SMART arm_5 490 530 IPR000225 GO:0005515
Lele08g2722 829 SMART arm_5 323 363 IPR000225 GO:0005515
Lele08g2722 829 SMART arm_5 625 665 IPR000225 GO:0005515
Lele08g2722 829 SMART arm_5 697 737 IPR000225 GO:0005515
Lele08g2722 829 SMART arm_5 741 781 IPR000225 GO:0005515
Lele08g2722 829 SMART arm_5 405 448 IPR000225 GO:0005515
Lele08g2722 829 SMART arm_5 364 404 IPR000225 GO:0005515
Lele08g2722 829 Coils Coil 70 90 - -
Lele08g2722 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
Lele08g2722 829 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 170 829 - -
Lele08g2722 829 Gene3D - 166 364 IPR011989 -
Lele08g2722 829 Gene3D - 365 674 IPR011989 -
Lele08g2722 829 SUPERFAMILY ARM repeat 370 784 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2722 Lele-ChrLele08 32680994 32683860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2722 180 829 U-box Gene Family AT1G20780 29.300 3.74e-50 187