Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2720 ATGAACCAGTTAGGACCCACGAATTTCTCTTCCTGTGCTTTCGGACCCCCTTATCACAAGCCACGAACTCTATGGAAATCCTCCGCAGATCTCTCCCACCCAGTGCACAGAAAAACCATTTCGGGAAGAGAGAGAAAGACCATCCAGACAAATGCAATATCATTTCTCAATTTCGTCAAATGCATCCTTCTCTGGCTTCTGCTAACTATCTCTAAACATGGTCGATCGCTTTCTTCCCTTGTTGATCGATTCTATTGGACAAATTGGGAAGAAATGGGTTGCATTAACTCTAAGAAGGCCTTCGCCAGGGATTCGCCCGAACATGTCCGTCCGGCATTGGGAACCACCGATAAGAGGTCTTCTGTTGTGGCGGAGCCTCCATCGAGAGTCCAATCTGGGGTTCTGACTCTTGAGACCAAAGCGGAACAACCATCGGATGATCGGATACAGGATGAGAAAAGGATTAAGAGGAACAGTTCTAAAGGAACTGGCTCTTTAAGAAGTTCTCATAGATTCGTGGAAGCCGAGCAGAATGCCGCCGGATGGCCCCCTTGGCTCACCTCTGCTGCAGGGGAAGCTATACAAGGATGGGTGCCTCTCAAGGCTGAGTCATTTGAGAAATTAGACAAGATCGGGCAAGGTACATATAGCAGTGTGTTCCGGGCACGGGAGGTTGCAAGTGGGAGGATGGTTGCCCTGAAGAAGGTACATATTGAGAACTTCCATCCTGAGAGCATTAGGTTCATGGCAAGAGAGATAGCAATCCTACGTAGGCTTGACCACCCAAACGTCATGAAATTGGAGGGTATCATTACATCACGTCTATCAAGTAGCATATACCTTGTATTTGAATACATGGAACACGATCTCGCCGGCCTAGTTTCCTCTCCCGACATCAAGTTCAACGAGACTCAGGTTAAATGTTACATGAGGCAATTATTAAGTGGGCTTGAACACTGCCATCTCCATGGCATTATGCACCGTGACATTAAAACATCCAATATATTGGTAAATAATCAGGGTATTCTCAAGATAGGAGATTTTGGATTAGCAAATACCATTAACAATAACAAGCATGCGTTGACGAGCTGTGTAGTGACTCTATGGTATCGTCCTCCTGAACTTTTGATGGGATCAACAAACTATGGAGTATCGGTGGATCTATGGAGTGTGGGCTGTGTATTTGCAGAACTTTTTCTGGGGAAGCCTCTTCTTAAGGGGAGAACTGAAGTTGAACAATTACACAAAATATTTAAACTTTGTGGCTCTCCACCTGATGAGTTCTGGAAAAAGTCTAAGCTTCCTCTTGCAACAATTTTTAAACCTCAGAATCAGTATGAACGCACTCTAAGGGAGCAGTGTAGAGACCTCCCAGTTACGGCTGTAAACTTAATCGAGACTTTACTTTCCGTTGAGCCTAGTGGCCGTGGGACTGCCTCCTCTGCCCTAATGTCTGAGTATTTCAGCACCAAGCCGTATGCTTGTGATCCATCAATTCTGCCAAAGTATCCACCTCACAAAGAAATGGATGCCAGGAATTGGGAAGAAGCACATAGGAAAAAGGCTGGAGCTAAAGTGCAAGAGGCTGCAAAACCAAGAAAACAAAAGCGAGTCTATAAAATTTTGCAAGAAGCAACTGATGTAAATCATTCAGCTCCAAGAAAAGAGGAAGTGCATTACATCTCTCAAAACGCTCGTAAAGATGATGGAAAAATGTATCATCCTAAGGAAAAAGGAGGAGCTATGTATAGAGGCTCATCAAAGCCATCATCGAATGCGACGTCAGGGGCTACCCGTGTAATGGATGTATCTCATGGCTTTAGTGTACAAATGCCAGTTTCAGGATCCAATGGCTATACATGGACCAAGAACAGAAAAGGAGATGCAACATCTACTTTATCAGATGGCTCAAAAAGCAAAATTAGTGCACTGGATCCATCCTTTGCAAAAGGCACCTATGATTTAACCAAACGAGGCACAAATGTATCAGAAAGAAAATATCATGACAAGACTTCCAACCATCAACAAAAGCATCAGGTTCCACACGGCACACCAGACTCTCTCAGTGAAGCTGATGAATACAATTACATAGATATTGATCCATCAGAACTAACAGATGTTGTGATAAATATTCAGGTAACTGAAACATCTAAGGAAATTCTAAAGTACAAGGCTATTGAAGATGACTATTCCTTTCTGTGTATAACATCATTTCACTTTCTTTCCTGA 2229 0.4352 MNQLGPTNFSSCAFGPPYHKPRTLWKSSADLSHPVHRKTISGRERKTIQTNAISFLNFVKCILLWLLLTISKHGRSLSSLVDRFYWTNWEEMGCINSKKAFARDSPEHVRPALGTTDKRSSVVAEPPSRVQSGVLTLETKAEQPSDDRIQDEKRIKRNSSKGTGSLRSSHRFVEAEQNAAGWPPWLTSAAGEAIQGWVPLKAESFEKLDKIGQGTYSSVFRAREVASGRMVALKKVHIENFHPESIRFMAREIAILRRLDHPNVMKLEGIITSRLSSSIYLVFEYMEHDLAGLVSSPDIKFNETQVKCYMRQLLSGLEHCHLHGIMHRDIKTSNILVNNQGILKIGDFGLANTINNNKHALTSCVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPLLKGRTEVEQLHKIFKLCGSPPDEFWKKSKLPLATIFKPQNQYERTLREQCRDLPVTAVNLIETLLSVEPSGRGTASSALMSEYFSTKPYACDPSILPKYPPHKEMDARNWEEAHRKKAGAKVQEAAKPRKQKRVYKILQEATDVNHSAPRKEEVHYISQNARKDDGKMYHPKEKGGAMYRGSSKPSSNATSGATRVMDVSHGFSVQMPVSGSNGYTWTKNRKGDATSTLSDGSKSKISALDPSFAKGTYDLTKRGTNVSERKYHDKTSNHQQKHQVPHGTPDSLSEADEYNYIDIDPSELTDVVINIQVTETSKEILKYKAIEDDYSFLCITSFHFLS 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2720 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 325 337 IPR008271 GO:0004672|GO:0006468
Lele08g2720 742 MobiDBLite consensus disorder prediction 659 690 - -
Lele08g2720 742 MobiDBLite consensus disorder prediction 121 139 - -
Lele08g2720 742 MobiDBLite consensus disorder prediction 618 641 - -
Lele08g2720 742 CDD STKc_CDK9_like 205 488 - -
Lele08g2720 742 MobiDBLite consensus disorder prediction 578 597 - -
Lele08g2720 742 Gene3D Transferase(Phosphotransferase) domain 1 288 528 - -
Lele08g2720 742 MobiDBLite consensus disorder prediction 141 159 - -
Lele08g2720 742 Pfam Protein kinase domain 205 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g2720 742 PANTHER CELL DIVISION PROTEIN KINASE 203 492 - -
Lele08g2720 742 MobiDBLite consensus disorder prediction 105 169 - -
Lele08g2720 742 SUPERFAMILY Protein kinase-like (PK-like) 200 494 IPR011009 -
Lele08g2720 742 MobiDBLite consensus disorder prediction 659 676 - -
Lele08g2720 742 ProSitePatterns Protein kinases ATP-binding region signature. 211 234 IPR017441 GO:0005524
Lele08g2720 742 FunFam probable serine/threonine-protein kinase At1g54610 192 287 - -
Lele08g2720 742 ProSiteProfiles Protein kinase domain profile. 205 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g2720 742 FunFam probable serine/threonine-protein kinase At1g54610 288 528 - -
Lele08g2720 742 SMART serkin_6 205 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g2720 742 Gene3D Phosphorylase Kinase; domain 1 193 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2720 Lele-ChrLele08 32666996 32670362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2720 197 553 Core Cell Cycle Gene Families AT5G10270 43.733 1.57e-100 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele08g2720 Pkinase 3.2e-68 CL0016