Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2712 ATGGCGGCCGCAAAACCCCAGAGGACTCCTCAAGAAGTTGAGGATATAATTCTCAGGAAAATTTTTCTCGTTTCCCTCACTGATTCCACGGGAAATGATCCTAGAGTTGTTTACTTGGAATTGACAGCAGCTGAGATTCTCAGCGAAGGCAATGAATTGAGGCTTTCACGGGACTTGATGGAACGGGTTCTGATTGATCGGCTTTCTGGGGGTTTCTCTTCTGCTGAATCGCCTTTCCAGTACTTAATCAATTGCTATCAACGAGCACACGATGAGGCTAAGAAAATTGCAAACATGAAAGATAAAAGTTTGAGGGGTGAGATGGAATCCGTGGTGAAACAAGCAAAGAAGTTGTGTGTATCATATTGTAGAATTCATTTAGCGAATCCTGATATGTTTCAAAGTGGAAATCCTAGTGCGAGTAAACACCAGAACTCACCATTGTTACCGCGTATTTTCTCTGAGGTCGGTGGCACCATCAACGGTTTCGGTGGGAGTGGCAATGCTGGAGGAGTTAAGAGCCCGCCTGGGTTTCTGGAGGAATTTTTCAGGGACTCAGACTCTGATAGTTTGGATCCAATATTGAAAGGGTTGTACGAAGAGTTGAGGGGTAGTGTGATGAAAGTTTCAGCTCTTGGGAATTTCCAAGATTCTTTGAGGGCACTGCTGTTTCTAGTTAGATTTCCGATTGGTGCAAAGTCTCTTGTAAGCCACGATTGGTGGATTCCTAAAGGAGTTTACATGAATGGACGTGCGATTGAAATGACAAGCATTTTAGGCCCTTTCTTTCATGTTAGCGCTCTTCCTGATCAAGCCTTTTTCAAGAGCCAGCCTGACGTTGGGCAGCAGTGCTTTTCAGATGCATCTACTCGCCGTCCATCTGATTTGCTATCTTCATTCACCACGATTAAAACTGTCATGAACAACTTATATGATGGCCTGAGTGAGGTTCTCCTCATTCTTCTGAAAAGTACAGATACTCGTGAAAATGTACTTGAGTATCTTGCTGAGGTAATCAATAAAAACGCATCCAGGGCTCATATACAGGTTGATCCTATAACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTTATGCTTCGTCTCTGTGAGCCATTTTTGGATGCAAATTTAACAAAAAGGGATAAGATTGATGCAAAATATGTCTACCATTCAAACCGTATGGATTTAAGAGGGTTGACTGCTCTTCATGCATCTTCTGAGGAAGTTGCTGTATGGCTAAAGAGTAAAGATGGTGAGAAACGTTTGCAACAATCTCAGGAAGCAACCAGTTCTGGTAGTAACAATGCTGGTGATCCTTCAAATGCAAAGCCTGCACCTCATTCTGAAAAGACAAAATACCCATTTATTTGCGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTAGGCCTCTTAAAAGCATTTTCTGACTTCAAACACTTGGTTCAGGATCTTTCTAGGTGTGAAGATTCTCTTTCAACACTCAAAGACATGCAGGCACGGTCATCCTCTCCTCAGTTGGAATCAGATATAGCTCGACTTGAGAAAGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAGATATTGCGGGATAACACATTTATTCAAAATGCTCTTTCCTTCTACCGCTTGATGATTGTCTGGTTGGTTGGCTTGGTTGGGGGATTTAAGATGCCTCTACCATCAACTTGCCCAATGGAATTTGCTTCGATGCCCGAGCATTATGTAGAAGATGCAATGGAATTGCTCATATTTGCTTCTAGGATTCCAAAAGCTTTGGATGGGGCCGTGCTGGATGAATTCATGAACTTTATAATTATGTTCATGGCCAGTCCTGAATTTATCAAAAATCCATATTTGAGAGCAAAGATGGTTGAAGTCTTGAATTGCTGGATGCCCCGTAGGAGTGGCTCATCTGCTACGTCCACTCTATTTGAAGGGCACCAGCTGTCTCTTGTGTATCTTGTGAGGAATCTTTTGAAGCTTTACGTTGACATTGAGTTTACTGGTTCTCACACTCAGTTTTATGACAAGTTTAACATCCGCCATAATATTGCCGAACTGCTAGAATACCTCTGGCAGGTCCCTAGCCATCGTAATGCCTGGAGACAGATTGCTAAAGAAGAGGAAAAGGGCGTCTATCTAAATTTCTTAAACTTCCTGATCAATGATAGTATTTATCTTCTAGATGAAAGTTTGAACAAAATTCTTGAACTAAAAGAATTGGAAGCTGAGATGTCAAATACCACTGAATGGGAGCGACGACCAGCTCAAGAAAGGCAGGAGAGGACGCGGCTATTCCACTCACAAGAAAATATTATTCGAATAGATATGAAGTTGGCAAATGAAGATGTTAGTATGCTTGCATTTACTTCAGAGCAGATTACTGTTCCTTTCCTCCTTCCTGAGATGGTTGAACGAGTGGCCAGCATGCTCAATTACTTTCTTCTACAACTGGTCGGTCCCCAAAGAAAATCACTTAGTCTGAAAGATCCTGAAAAGTATGAATTCCGTCCCAAGCATTTGCTTAAGCAGATTGTGCACATTTATGTTCATCTAGCCAGAGGTGATACTGACAACATCTTCCCATCTGCCATCTCCAAGGATGGTCGATCATACAATGATCAGCTGTTTAGTGCTGCAGCAGATGTCCTTCGGAGAATAGGCGAGGATGGAAGAGTTATACATGAATTTATCGAACTCGGTGCTAAAGCAAAAGTGGCTGCTTCTGAGGCCATGGATACTGAAGCTGTTTTGGGGGACATACCAGATGAATTCCTCGATCCAATTCAGTACACTCTGATGAAAGATCCAGTTATTTTACCTTCTTCAAGGATCACAGTTGATCGTCCTGTAATTCAGAGGCATCTTCTTAGTGATAGTACTGATCCGTTCAATCGTTCTCATCTCACTGCCGATATGCTGATTCCTGATGATGAACTCAAGGCAAGAATTGTCGATTTTGTGAGGACCCAGGAATTGAGGAAACATGAGAAAGGCCAAAGTATCCAGAGTAGCAAGGCCACAATTCAGGCTACTAATGATGGGGAAATGTTGATTGATTAG 3087 0.4218 MAAAKPQRTPQEVEDIILRKIFLVSLTDSTGNDPRVVYLELTAAEILSEGNELRLSRDLMERVLIDRLSGGFSSAESPFQYLINCYQRAHDEAKKIANMKDKSLRGEMESVVKQAKKLCVSYCRIHLANPDMFQSGNPSASKHQNSPLLPRIFSEVGGTINGFGGSGNAGGVKSPPGFLEEFFRDSDSDSLDPILKGLYEELRGSVMKVSALGNFQDSLRALLFLVRFPIGAKSLVSHDWWIPKGVYMNGRAIEMTSILGPFFHVSALPDQAFFKSQPDVGQQCFSDASTRRPSDLLSSFTTIKTVMNNLYDGLSEVLLILLKSTDTRENVLEYLAEVINKNASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVYHSNRMDLRGLTALHASSEEVAVWLKSKDGEKRLQQSQEATSSGSNNAGDPSNAKPAPHSEKTKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDLSRCEDSLSTLKDMQARSSSPQLESDIARLEKEIELYSQEKLCYEAQILRDNTFIQNALSFYRLMIVWLVGLVGGFKMPLPSTCPMEFASMPEHYVEDAMELLIFASRIPKALDGAVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSSATSTLFEGHQLSLVYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTTEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITVPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTDNIFPSAISKDGRSYNDQLFSAAADVLRRIGEDGRVIHEFIELGAKAKVAASEAMDTEAVLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDDELKARIVDFVRTQELRKHEKGQSIQSSKATIQATNDGEMLID 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2712 1028 SUPERFAMILY RING/U-box 921 999 - -
Lele08g2712 1028 MobiDBLite consensus disorder prediction 427 444 - -
Lele08g2712 1028 Pfam Ubiquitin elongating factor core 259 912 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Lele08g2712 1028 FunFam Ubiquitin conjugation factor e4 a 928 1006 - -
Lele08g2712 1028 Coils Coil 507 534 - -
Lele08g2712 1028 MobiDBLite consensus disorder prediction 425 450 - -
Lele08g2712 1028 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 928 1008 IPR013083 -
Lele08g2712 1028 CDD RING-Ubox_UBE4A 931 999 - -
Lele08g2712 1028 SMART Ubox_2 932 995 IPR003613 GO:0004842|GO:0016567
Lele08g2712 1028 MobiDBLite consensus disorder prediction 1005 1028 - -
Lele08g2712 1028 PANTHER UBIQUITINATION FACTOR E4 5 1005 IPR045132 GO:0000151|GO:0030433|GO:0034450
Lele08g2712 1028 ProSiteProfiles U-box domain profile. 928 1002 IPR003613 GO:0004842|GO:0016567
Lele08g2712 1028 Pfam U-box domain 929 999 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2712 Lele-ChrLele08 32616955 32625754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2712 1 1028 U-box Gene Family AT5G15400 75.405 0.0 1608