Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2666 ATGAACCTCAACAGCGGCACCCTCGCCTTCACCTTTGGTATCATCTTTCTAATCCTATCCATCTTTTTGGCCTACCTCCGCCTTCGCCAGCTCTCCGGCAACCCCGCCATATTCAACTTCCTTGCTCGTCCTCCTGGTTCCGCCGACGCCGGCTCCGCCATACCAGTTGGCGCCATCGTGGAGTTCCCCGCCGTAGCAGAACGTGGGCTCGATGACTCCGCTATCAACACCTTCCCCAAGCTCTCCTACTCTGAGATGAAGAAAAGCTCTTATAACAATATTGAAGATCCTTCTAATAATTCTTCTTCTTGTTCCATCTGCTTGGCGGATTATATGGAAGACGACATGTTAAGATTGCTTCCTGATTGCGGCCATGTTTATCATCTTCATTGCGTTGACCCGTGGCTCAAGTTACACAACACTTGCCCTATCTGTCGAACTCGAATATCCTCCTCTTTGTCTGTTAAAGCTCACGATGATCGCTCAAATAACTCCGTCGACGGCCGGGACATAGTTTGA 519 0.499 MNLNSGTLAFTFGIIFLILSIFLAYLRLRQLSGNPAIFNFLARPPGSADAGSAIPVGAIVEFPAVAERGLDDSAINTFPKLSYSEMKKSSYNNIEDPSNNSSSCSICLADYMEDDMLRLLPDCGHVYHLHCVDPWLKLHNTCPICRTRISSSLSVKAHDDRSNNSVDGRDIV 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2666 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 152 IPR013083 -
Lele08g2666 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 150 IPR045899 -
Lele08g2666 172 SMART ring_2 104 145 IPR001841 -
Lele08g2666 172 CDD RING-H2_PA-TM-RING 108 146 - -
Lele08g2666 172 SUPERFAMILY RING/U-box 103 153 - -
Lele08g2666 172 Pfam Ring finger domain 103 146 IPR001841 -
Lele08g2666 172 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Lele08g2666 172 FunFam E3 ubiquitin-protein ligase ATL6 60 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2666 Lele-ChrLele08 32285603 32286121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2666 69 147 C3H Transcription Factor Family AT5G06490 54.430 5.38e-27 99.4