Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2645 ATGGGCTCTGAAGCGATCCTTCTCCCAAAATGGGCATCACAGCCTTGCATTATGGGAATCGACGAAGCTGGCCGAGGACCCGTTTTAGGACCCATGGTGTATGGATGCTTGTACTGTGCTCGCTCCTATCAGAATACCCTCGCAACTTTGAGTTTTGCTGATTCAAAGACACTAAAAGAAGAGAAGAGGGAAGAATTGTTTGATAATATAAAGGGAAATGAATCAATTGCATGGGCAGTTGATGTCTTAGACCCTAGGGAACTCTCAGCTAAAATGTTGAAGAGGAACAAGATAAACCTGAATGAGATATCACATCAATCTGCAATGGGCTTGATTGATAGGGTACTGAAGATGGGAGTTCTTCTGACTGAGGTCTATATAGATACTGTGGGTGATCCAGGAAAATATGAAATTATGCTATCAAAAACTTTTCCATCTATTAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTCTATCCTGTTGTGAGTGGTGCTAGCATAGTTGCAAAGACCCCCAAACCAAATCCTGGTTGGAACAGCACAAACATTCTGTCTTTGGATTCCCAACATTGGTCAGATTCAGCTGGGGAACCTGCACAACATATTTTAAAGATATTGTGGAAGTCTTATGATCCCTCTGAGTATGTTGAAGGATGA 657 0.4186 MGSEAILLPKWASQPCIMGIDEAGRGPVLGPMVYGCLYCARSYQNTLATLSFADSKTLKEEKREELFDNIKGNESIAWAVDVLDPRELSAKMLKRNKINLNEISHQSAMGLIDRVLKMGVLLTEVYIDTVGDPGKYEIMLSKTFPSIKFVVAKKADSLYPVVSGASIVAKTPKPNPGWNSTNILSLDSQHWSDSAGEPAQHILKILWKSYDPSEYVEG 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2645 218 SUPERFAMILY Ribonuclease H-like 16 172 IPR012337 -
Lele08g2645 218 CDD RNase_HII_eukaryota_like 18 170 - -
Lele08g2645 218 Gene3D - 4 173 IPR036397 GO:0003676
Lele08g2645 218 TIGRFAM TIGR00729: ribonuclease HII 17 171 IPR004649 GO:0004523|GO:0016070
Lele08g2645 218 FunFam Ribonuclease 3 175 - -
Lele08g2645 218 PANTHER RIBONUCLEASE H2 SUBUNIT A 7 171 IPR001352 GO:0003723|GO:0004523
Lele08g2645 218 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 15 218 IPR024567 GO:0004523
Lele08g2645 218 Pfam Ribonuclease HII 18 171 IPR024567 GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2645 Lele-ChrLele08 32106110 32108877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2645 1 173 Core DNA Replication Machinery Family AT2G25100 66.474 2.90e-76 229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2715 05 43025523 43031534 Lele08g2645 08 32106110 32108877 hybridization
Lele06g2702 06 34826270 34829436 Lele08g2645 08 32106110 32108877 hybridization