Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2625 ATGGATGTTCTATCGATTTCGCTTACGTTAAGTGAACCTATAGCCTTTTCCATTCTTAAACCTCATAGAATCCAACTTCACCACCTTCCCTTAAACCCCAGATTGCGCAATACATCAAATAACACAACCCATTTCAAGTTTTCTTCTTCTTCGACTTCGTCTTCCTTTTTCTGCAAGTGTTTCTGTTCTAGAATAGCGGCAACTTCATCAACTACTTACACTCCCTTAGCTTCTTCCACCACTGAGAACCGCCACTGGATTGTAATCATGGAAAAGCCTCCACAAGGGGTGGATTCCAAGCAGCAAGTCATTGATTATTATGTTCAAACTCTGCAAATAGTTATTGGCAGTGAGAAAGAGGCTCAAATGTGTATTTACGATGCTTCGTGGGATACCCACTACGGTTTTTGTTGTGACATCGATGAAGAAACTTCTTCCCAGCTCGCCCGTTTATCTGGGGTCATTTCAGTTAAGCCTGACCCAGATTTCAGTTCTCCAGAAAAGGATTATAGGTCATCATATGGGCAGGAAGAGAATTTGTCAAAGCTACAAAATGGATCCACTTTGTTGTTCCCTGCTGGGAATTCAAAACATTGGCTTGTTCGAATGGATAAACCTGGTGTTGGGGTTGTTACGAAGGCCCAAGTCGTGGATTTTTATGCTCAAATTCTAACCAAAGTCATGGGAAATGAGAAGGAGGCACAAATGTGTATATACCATGTTTCTTGGAAAACCAACTTTGGCTTTTGTTGTGAGCTTGATGAGGATTGTGCACGAGAACTAGCTGGCGTCCCTGGTGTCTTATCAGTTCAGCCAGATAACAATTTTGAGTCAGAAATTAAAGATTATGCAGGTGTAAACTTAGGAAACAGTTTGAATGTGCTGAACTCTTCTGAAGCAAGTGAGACAACTCCTTTGAAAACTAAAAAGCTTTTTGTGACAGGCCTATCATTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATTATGGATAAAATTTCTAAAAGGTCCAAGGGTTATGCATTTGTGGAATACACAACAGAGGAGGCTGCAGCTGCAGCATTGAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTTGTGGATGCTGCCAAGCCTAGCCCTCCCAAATATAATAGGGGTCGTGCGAGACCTGTAGCCTGA 1206 0.4146 MDVLSISLTLSEPIAFSILKPHRIQLHHLPLNPRLRNTSNNTTHFKFSSSSTSSSFFCKCFCSRIAATSSTTYTPLASSTTENRHWIVIMEKPPQGVDSKQQVIDYYVQTLQIVIGSEKEAQMCIYDASWDTHYGFCCDIDEETSSQLARLSGVISVKPDPDFSSPEKDYRSSYGQEENLSKLQNGSTLLFPAGNSKHWLVRMDKPGVGVVTKAQVVDFYAQILTKVMGNEKEAQMCIYHVSWKTNFGFCCELDEDCARELAGVPGVLSVQPDNNFESEIKDYAGVNLGNSLNVLNSSEASETTPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAAAAALKEMNGKIINGWMIVVDAAKPSPPKYNRGRARPVA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2625 401 SMART rrm1_1 310 383 IPR000504 GO:0003723
Lele08g2625 401 Gene3D - 292 400 IPR012677 -
Lele08g2625 401 SUPERFAMILY RNA-binding domain, RBD 299 397 IPR035979 GO:0003676
Lele08g2625 401 FunFam Organelle RRM domain-containing protein 1, chloroplastic 187 276 - -
Lele08g2625 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 377 IPR000504 GO:0003723
Lele08g2625 401 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 187 378 IPR039206 GO:0016554
Lele08g2625 401 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 67 164 IPR037045 -
Lele08g2625 401 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 192 277 IPR037045 -
Lele08g2625 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 387 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2625 Lele-ChrLele08 31979394 31984708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2625 306 400 C2H2 Transcription Factor Family AT2G19380 35.052 6.72e-12 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g2684 06 34703018 34706406 Lele08g2625 08 31979394 31984708 hybridization