Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2624 ATGTATTGCAATTTTTTGGAGCATGCATCAGAGTATGTGAAGCAGGCGGTTCAAGAGGATGATGCTGGAAATTATAAGAAGGCATTTACTCTCTATATGAATGCATTGGAATACCTAAAGACCCATTTGAAGTATGAGAAGAACCCCAGGATTAAGGAAACAATAAACGAGAAATTTGTTCAATACTTGAGGAGGGCAGAGGAGATACGCGCCTTTCTTGATAGAGGAGAAATTGGGCCTAACTTACCTGGTGGTGCAGCTCAATCTCATGTTGTGAGACCAAAGGAAAATACAAAGCCAAAGAGTGGAGAAGCTAGTGATAAGGATGATCCAGAGAAAGCAAAGCTGAAGGCTGGTCTTGATTCCGTAATAATCAGAGAGAAACCAAATGTCAAATGGAGTGATGTTGCTGGGCTTGAGAGTGCCAAACAGGCATTACAAGAGGCTGTGATATTGCCTGTTAAGTTCCCCCAATTTTTTACGGGGAAGAGAAAACCATGGAGAGCATTTCTATTGTATGGTCCCCCTGGAACAGGGAAGTCATATTTAGCAAAGGCTGTAGCTACAGAGGCAGACTCAACATTCTTCAGTGTTTCATCATCAGATCTAGTTTCTAAATGGATGGGTGAAAGCGAAAAGCTGGTTTCCAGTCTCTTCCAAATGGCTCGTGAAAGTGCTCCTTCAATTATTTTTATTGATGAAATAGATTCTTTATGTGGCCAACGAGGTGAAGGCAATGAAAGTGAAGCATCTAGACGCATCAAAACTGAACTTCTTGTGCAAATGCAGGGTGCGGGTAAAGAAGATCATAAAGTTCTCATTCTTGCAGCCACCAATACTCCTTATGCTCTTGATCAGGTGCATCTTGGAGATACCCCACATAACTTAACTGAAAAAGATTTTGAGGAATTGGCTCGCAAAACTGATGGATTTTCTGGTTCAGACATTTCTGTTTGTGTTAAGGATGTACTTTTCGAACCAGTTCGTAAAACCAGGGATTCCAAATTCTTTAGGAAAACCTCTAAGGGAATGTGGATCCCTTGCGAGCCTACTGAAAAAGGAGCTGTTAACATTAGCCTGCAAGAACTTGATGCGCAAGGCCTTGCTTCAGAGATTGTGCCACCACCAATAACAAGAGAAGATTTTGATGAAGTATTAAGAAGGCAGAAGCCAACGGTAAGTAAAGCTGATCTCGAGGTGCATGAGAGATTTACCCAGGAGTTTGGGGAGGAGGGTTGA 1239 0.4205 MYCNFLEHASEYVKQAVQEDDAGNYKKAFTLYMNALEYLKTHLKYEKNPRIKETINEKFVQYLRRAEEIRAFLDRGEIGPNLPGGAAQSHVVRPKENTKPKSGEASDKDDPEKAKLKAGLDSVIIREKPNVKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGAGKEDHKVLILAATNTPYALDQVHLGDTPHNLTEKDFEELARKTDGFSGSDISVCVKDVLFEPVRKTRDSKFFRKTSKGMWIPCEPTEKGAVNISLQELDAQGLASEIVPPPITREDFDEVLRRQKPTVSKADLEVHERFTQEFGEEG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2624 412 Pfam MIT (microtubule interacting and transport) domain 6 70 IPR007330 -
Lele08g2624 412 CDD AAA 137 285 - -
Lele08g2624 412 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Lele08g2624 412 SMART smart 2 80 IPR007330 -
Lele08g2624 412 Gene3D - 4 75 - -
Lele08g2624 412 FunFam vacuolar protein sorting-associated protein 4A 282 392 - -
Lele08g2624 412 MobiDBLite consensus disorder prediction 94 114 - -
Lele08g2624 412 Gene3D - 128 286 IPR027417 -
Lele08g2624 412 PANTHER AAA DOMAIN-CONTAINING 287 410 - -
Lele08g2624 412 CDD MIT_VPS4 4 77 IPR045253 -
Lele08g2624 412 SUPERFAMILY MIT domain 3 86 IPR036181 -
Lele08g2624 412 SMART AAA_5 166 300 IPR003593 -
Lele08g2624 412 MobiDBLite consensus disorder prediction 80 114 - -
Lele08g2624 412 Pfam Vps4 C terminal oligomerisation domain 345 409 IPR015415 -
Lele08g2624 412 FunFam Vacuolar protein sorting-associated protein 4 129 289 - -
Lele08g2624 412 Gene3D - 288 388 - -
Lele08g2624 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 395 IPR027417 -
Lele08g2624 412 Pfam ATPase family associated with various cellular activities (AAA) 171 286 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2624 Lele-ChrLele08 31973374 31977126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2624 165 333 Calmodulin-binding Proteins AT3G56690 32.653 2.49e-26 110