Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele08g2608 | ATGATATCTTCTGGGGTTAACTTGGTGATGACTGTGATTGGATTTGCGGTGAGCACTATGTTCATCGTTTTCGTTTGCACTAGACTCATCTGTGCTCGAATTCACTTAAATGCTTCTCGCCGATCCCTCCTTGTTGCTTCCAGATCCAATCTCAGTCTGCTTGAGCGGGGATCTCATGGTCTTGAACCCATAGCAGTAGCGAACTTTCCGACCAAGAAGTACAGTGATGGATGCTTTGCTGCTGCAGAAAATTCTCAATGCACAGTTTGTCTTTCGGAATACCAAGGCGAGGATGTACTGCGCATCCTCCCTTACTGTGGACACTTCTTCCATGCAACCTGCATAGACATATGGCTGCAGCAACATTCCACATGCCCTGTATGTCGAATCTCATTACGCAAATCATCCGAGAGAAAACACATAATGCAACCGTTGTTCAGCTCTGTTGTTCAATCTAATTATGGCATGCAATCTATTGAGGCTCATCCTTATCACTGTATGATGGCTAATAATGAGTTATTATCACCAAGAAACCATGATGACATACATGGCGTTAACTCGCCGGTACGAGAGGATCGTTATGCAGCCGAAGGCGATGGAACGGTTGCTATAGAGAATGTGACCAATTTAAGTGATGGTGATGATCGGTCCATGAAAGATGCAGGAAAGAAGCATTTAGAGAGCCCATCAATCCCCTTAAGTTAA | 705 | 0.4454 | MISSGVNLVMTVIGFAVSTMFIVFVCTRLICARIHLNASRRSLLVASRSNLSLLERGSHGLEPIAVANFPTKKYSDGCFAAAENSQCTVCLSEYQGEDVLRILPYCGHFFHATCIDIWLQQHSTCPVCRISLRKSSERKHIMQPLFSSVVQSNYGMQSIEAHPYHCMMANNELLSPRNHDDIHGVNSPVREDRYAAEGDGTVAIENVTNLSDGDDRSMKDAGKKHLESPSIPLS | 234 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele08g2608 | 234 | Pfam | Ring finger domain | 86 | 129 | IPR001841 | - | |
| Lele08g2608 | 234 | FunFam | E3 ubiquitin-protein ligase ATL6 | 49 | 135 | - | - | |
| Lele08g2608 | 234 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 135 | IPR013083 | - | |
| Lele08g2608 | 234 | PANTHER | OS11G0150450 PROTEIN | 1 | 177 | - | - | |
| Lele08g2608 | 234 | SUPERFAMILY | RING/U-box | 81 | 134 | - | - | |
| Lele08g2608 | 234 | MobiDBLite | consensus disorder prediction | 205 | 234 | - | - | |
| Lele08g2608 | 234 | CDD | RING-H2_PA-TM-RING | 86 | 129 | - | - | |
| Lele08g2608 | 234 | ProSiteProfiles | Zinc finger RING-type profile. | 87 | 129 | IPR001841 | - | |
| Lele08g2608 | 234 | SMART | ring_2 | 87 | 128 | IPR001841 | - | |
| Lele08g2608 | 234 | MobiDBLite | consensus disorder prediction | 212 | 226 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele08g2608 | Lele-ChrLele08 | 31811842 | 31814684 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele08g2608 | 6 | 178 | Rapid Response to Elicitors | AT2G35000 | 30.366 | 1.73e-20 | 87.0 |