Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2596 ATGGCTACTGAGGACTTCCCTCTCATTGATTCCCCCTCCCACAATCCCCACTCGCAACCTCTCCTCCACGCTCACACGCGCCCCTTCCCTTCCTCCTCTAGCCCCACCGCTGGAGTTGCAGCTACCTCCGCCGATGCCGGCGACTCCTCCAACGCCGACTACTTCACTCAACCCTTTCCCGACGATGGCGAAGATTCCTCTGATCCGAACAAATCCGCGTCCGGAGCCTTGACCCCTAATTCGAAGAGTACTGCCGTCGACAGCTCCTATTACAATAACAAGAAGTCGAAATCCTCCGCTGCAGGTGGCGAAGGCAGCGCTGCTACGAGCGCTGAACCTGATTTAGGATCCGAAGCGGCTTACCGGGTCGATTACCGGAAGGATCGCGAGGACTGGAGTGACACGGCGATTGAGTGTCTCCTGGACGCTTACACAGAGAAACTGAACCAGCTGAATCGCGGAAATCTGCGCGGGCGCGATTGGGAGGAGGTGGCGAGAGCCGTTAGCGAGCGGTGCTCCGTTGGTAGTAGTGTCGATGCAAAGAACAAATCGTATAAGAGTGTGGAGCAATGCAAGAACAAGATTGATAATTTGAAGAAGAGGTACAAGGTGGAGCTTCAGAGGCTAAGTAGTGGCAGCATCACATCGAGTAACTGGCACTGGTATAAAAAGATCGAAGCTATTGTTGGGAACTCATTGACTGTGAAGACGGTGTCAGATGATGAGAAGGGTGGTGGTGGAGCTAATTCCTTGTCTGCAGCGAGACGCCCAAAGAACAGATATACACCTACCAATCTTGCAGTGTTGAATAACCCGAAAACAAAACCAGCGTCTAATCTCAAATGGCATAGAGTTCTGTTTAAAATCAGTGGATCTGCTTTAGCTGGAAACTGCCAAAGTATTGACCCCAAGGTGGCAATGCAGATTGCTGGGGAAGTGGCGACAGCTTGCCGCCTTGGTGTTGAGGTTGCCATTGTTGTTGGTGGTCGTGACTTCTTTTGTGGAGATTCTTGGGTGTCTGCTACTGGGTTGGACAGACCTACGGCTTCCCAAATTGGTATGATGGCTACGGTTATGAATTCTATTCTGCTTCATTCTGCTTTGGAGAAGCTGGGTATTCAGGCACGTGTTCAAAGTGCATTCTCTGTGCCAGAGATTGCTGAACCTTATAACAGGCAACGAGCTATCCGACATCTCGAGAAAGGAAGGGTTGTCATTCTTGGTGGTGTCGGTGCTGGCACAGGAAATCCTCTCTTTATCACTGATACAGCTGCAGCTATTAGAGCTTCCGAGCTTAATGCAGATGTTATGGTGAAAGGAACCAATGTTAGTGGGGCCTATGATTGCCATGCTGGCAGTGAAAATGTGACACTTGATCACATTTCTTTTCGGGAAGTTGCTTCGAGGGGCATCACTTCCATAGATATGATGGCATTAGCATACTGTGAAGAGAATGGAATTCCAGTTGTAGTCTTCAACATGCTTGAACCGGGGAATGTTTCAAGAGCACTATGTGGAGATCAAATTGGCATCTTGATTGATCAAACAGGAAGTATTAATTAA 1563 0.4939 MATEDFPLIDSPSHNPHSQPLLHAHTRPFPSSSSPTAGVAATSADAGDSSNADYFTQPFPDDGEDSSDPNKSASGALTPNSKSTAVDSSYYNNKKSKSSAAGGEGSAATSAEPDLGSEAAYRVDYRKDREDWSDTAIECLLDAYTEKLNQLNRGNLRGRDWEEVARAVSERCSVGSSVDAKNKSYKSVEQCKNKIDNLKKRYKVELQRLSSGSITSSNWHWYKKIEAIVGNSLTVKTVSDDEKGGGGANSLSAARRPKNRYTPTNLAVLNNPKTKPASNLKWHRVLFKISGSALAGNCQSIDPKVAMQIAGEVATACRLGVEVAIVVGGRDFFCGDSWVSATGLDRPTASQIGMMATVMNSILLHSALEKLGIQARVQSAFSVPEIAEPYNRQRAIRHLEKGRVVILGGVGAGTGNPLFITDTAAAIRASELNADVMVKGTNVSGAYDCHAGSENVTLDHISFREVASRGITSIDMMALAYCEENGIPVVVFNMLEPGNVSRALCGDQIGILIDQTGSIN 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2596 520 Pfam Myb/SANT-like DNA-binding domain 130 228 IPR044822 -
Lele08g2596 520 Hamap Uridylate kinase [pyrH]. 280 514 IPR015963 GO:0005737|GO:0006221|GO:0033862
Lele08g2596 520 MobiDBLite consensus disorder prediction 1 114 - -
Lele08g2596 520 FunFam Aspartate/glutamate/uridylate kinase family protein 132 204 - -
Lele08g2596 520 Pfam Amino acid kinase family 284 493 IPR001048 -
Lele08g2596 520 Coils Coil 181 208 - -
Lele08g2596 520 MobiDBLite consensus disorder prediction 69 105 - -
Lele08g2596 520 FunFam Uridylate kinase isoform A 274 519 - -
Lele08g2596 520 PANTHER URIDYLATE KINASE 125 519 - -
Lele08g2596 520 MobiDBLite consensus disorder prediction 12 56 - -
Lele08g2596 520 Gene3D - 132 204 - -
Lele08g2596 520 Gene3D - 273 519 IPR036393 -
Lele08g2596 520 CDD AAK_UMPK-PyrH-Ec 284 514 IPR015963 GO:0005737|GO:0006221|GO:0033862
Lele08g2596 520 SUPERFAMILY Carbamate kinase-like 281 513 IPR036393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2596 Lele-ChrLele08 31719565 31722589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2596 34 239 Trihelix Transcription Factor Family AT3G14180 29.469 1.53e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele08g2596 AA_kinase 6.7e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2670 05 42614556 42617428 Lele08g2596 08 31719565 31722589 hybridization
Lele06g2657 06 34451985 34454982 Lele08g2596 08 31719565 31722589 hybridization