Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2569 ATGGAAGCTACAGAAGAAGTCATCATCTCTAAAGACCAAACACAGATCGTCAAAGGCAAAAGAACCAAAAGGGTAAGGCCACAATCTCCATCGCCCCTCGCCAAAGCCGAAGAAGATCAATTTCTAGGTGAAGATGATAATAATACCAAGAACAACTCTGCCGCCGCAGCCGCCACAACAACAGCTTCTTCTACAGAATTTGAAGATCACAATCGTATCATTATTCACAATAACAACAACAGTAGCAGCACAGAGGAAGAGGAGGACATGGCCAATTGCTTGATCCTTCTGGCTCAAGGCCAATCTCGGGATTCTCCGGAACTCGCCTCCGAGGAAGACGGTAACATGATGGCGATGATTATGAAGCCTAACAACAACATCAACAATTACAATTATAACAACAGCAGTAGGAAATTCATGGAAGCATCCACCATTGGAGGAGCTAACAGAGCAGGTTTTTATGCCTATGAATGCAAGACTTGTAATAGAACCTTTCCTTCTTTTCAAGCACTTGGAGGCCACAGAGCAAGCCACAAGAAGCCTAAGAGCTTATCGTCGCCTTCATTGGCCACCTCCATTATAGACAAAGAGAAGAAGAAAGAGCAAGACTTCATTCTACACAAGAACAATAATCACAGCACACTCTCTTTTCAACTTTTAAATAGTAGTGTCAATGGTAATAAGAATAAGAATAAGGTTCATGAGTGTTCAGTTTGTGGGGCTGAGTTTGCTTCGGGTCAGGCTTTAGGTGGCCACATGAGAAGGCACAGAGCACCCATTGGAACAACGACGACTACGAACAATGGGATGACGACTTCGTTGGCGCTTAACAACAACAATCCAGTGGGTTTGGGTTTGGAAGCAGATCATCAATACAACAATGAAGATCATCATCATCAACCCAGAAAGAAAAGGAACGTTTTGACTTTGGATTTAGATCTTAATCTTCCTGCCCCAGAAGATGATGATGATCATCAGACCGATTCATCATCTTTTGCGTTTGAACTCAAGAAGCAGAAGCAGCAACAACAACAAGAAGCAAGTCTGGTTTTTTCTTCTGCACCTGCTTTGGTGGATTGTCATTACTGA 1089 0.4298 MEATEEVIISKDQTQIVKGKRTKRVRPQSPSPLAKAEEDQFLGEDDNNTKNNSAAAAATTTASSTEFEDHNRIIIHNNNNSSSTEEEEDMANCLILLAQGQSRDSPELASEEDGNMMAMIMKPNNNINNYNYNNSSRKFMEASTIGGANRAGFYAYECKTCNRTFPSFQALGGHRASHKKPKSLSSPSLATSIIDKEKKKEQDFILHKNNNHSTLSFQLLNSSVNGNKNKNKVHECSVCGAEFASGQALGGHMRRHRAPIGTTTTTNNGMTTSLALNNNNPVGLGLEADHQYNNEDHHHQPRKKRNVLTLDLDLNLPAPEDDDDHQTDSSSFAFELKKQKQQQQQEASLVFSSAPALVDCHY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2569 362 MobiDBLite consensus disorder prediction 15 65 - -
Lele08g2569 362 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Lele08g2569 362 SMART c2h2final6 234 256 IPR013087 -
Lele08g2569 362 SMART c2h2final6 156 178 IPR013087 -
Lele08g2569 362 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Lele08g2569 362 PANTHER ZINC FINGER PROTEIN ZAT5 78 343 - -
Lele08g2569 362 Pfam C2H2-type zinc finger 233 259 - -
Lele08g2569 362 Pfam C2H2-type zinc finger 155 181 - -
Lele08g2569 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 256 IPR013087 -
Lele08g2569 362 MobiDBLite consensus disorder prediction 46 65 - -
Lele08g2569 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Lele08g2569 362 Gene3D Classic Zinc Finger 154 256 - -
Lele08g2569 362 SUPERFAMILY beta-beta-alpha zinc fingers 156 256 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2569 Lele-ChrLele08 31461406 31462494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2569 1 362 C2H2 Transcription Factor Family AT5G04390 39.646 1.63e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g2569 zf-C2H2_6 6.4e-13 CL0361