Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2565 ATGCTTCCTTCTATTACCTGCATTCTCTTCCTATGTATCTTCTTGAGTTCTTTCTCTTCTTCCATTAAAGCTTCCTTCAACCTTTCCTTGCCCCACCAGCATCCTTACCCTGAAGCTGTGGTTCATGAAGTTCACAGGAGAGTCAATGTATCTCTTTCCCGGCGGGAACTACTCGCCGGCTCCGGAAAGGACCTCGGTAATGGCTGTCTCACCGGAAATCCAGTTGACGACTGCTGGAGATGCGACCCTAACTGGGCGGCAAACCGGCAGAAGCTCGCGGACTGCGGCATTGGGTTCGGCCGTGACGCCATGGGTGGAAAAGGCGGCCGGATCTACGTCGTCACAGACTCATCCGACTCCGACCTAGCGAACCCAACTCAGGGTACTCTTCGTTTCGGAGTTATCCAAGACGAGCCCCTCTGGATCATCTTCTCCAGCAGCATGACCATCACTCTAAAGCACGAACTCATCTTCAACAGCTTCAAAACTGTCGACGGCCGCGGCGCCAACGTCCACATAACCGGCCACGGCTGTCTAACACTACAATACATTTCCAACGTCATCATCCACAACGTCCACATCCACCACTGCAAACCCTCAGGGAATACAAACATACGCTCAAGCCCAACACACGTCGGTTACAGAGGCAAATCGGACGGCGACGGAATCTCAATATTCTCATCCCGGAAGATCTGGATCGACCATTGCTCGCTGTCGTACTGCACGGACGGTCTTGTCGACGCGATAATGGGATCGACGGGTATAACGATATCGAACAGCCATTTCGCGCACCATGACGAAGTGATGCTTCTAGGTCACGACGATAAGTACTTGCCGGACCGGGAAATGCAGGTGACGATAGCGTTTAACCATTTCGGAGAAGGATTGGTTCAGAGAATGCCGAGATGTAGATTGGGGTATATACATGTTGTGAACAACGATTTCACTCAGTGGGAGATGTATGCGATCGGCGGCAGTGCCAACCCCACCATCAACAGCCAGGGTAACCGTTATACGGCGCCGCTCAGTCCTGATGCTAAAGAGGTGACGAAGCGCGTGGACACCGACGAGGGGGAATGGGCGGATTGGAACTGGAGGACGGAGGGTGACGTCATGGTCAACGGCGCATTCTTCGTGCCGTCCGGCGGTGGCTTCAGCGCTCAGTATGCCAGAGCCTCCAGCGTCGACCCCAAGTCCGCCGTCCAGATTGACCAGCTCACCGGCAATGCCGGCGTCTTCGGCGATCCCAGGGATAATGGAGATCTGTTCCCCGGGTTCAGCGGCGGTGGGACCGTCACGGGCGCCACCGGCACCGGCAACGTGGGGTCCAGCGGCGGCGACGATGGGGACTTCTTTGGAATGATATTCAAGGGAAGTGGTAGCAGCGAAGCAGCGCCACCCTCACTTTCCCTTGTTTCAATCTTTTTGTCTCTTCTCATTATTTCCATTTTGTACACTTTCACCAACCTTGCCCTCATACTATGA 1485 0.5441 MLPSITCILFLCIFLSSFSSSIKASFNLSLPHQHPYPEAVVHEVHRRVNVSLSRRELLAGSGKDLGNGCLTGNPVDDCWRCDPNWAANRQKLADCGIGFGRDAMGGKGGRIYVVTDSSDSDLANPTQGTLRFGVIQDEPLWIIFSSSMTITLKHELIFNSFKTVDGRGANVHITGHGCLTLQYISNVIIHNVHIHHCKPSGNTNIRSSPTHVGYRGKSDGDGISIFSSRKIWIDHCSLSYCTDGLVDAIMGSTGITISNSHFAHHDEVMLLGHDDKYLPDREMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPLSPDAKEVTKRVDTDEGEWADWNWRTEGDVMVNGAFFVPSGGGFSAQYARASSVDPKSAVQIDQLTGNAGVFGDPRDNGDLFPGFSGGGTVTGATGTGNVGSSGGDDGDFFGMIFKGSGSSEAAPPSLSLVSIFLSLLIISILYTFTNLALIL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2565 494 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Lele08g2565 494 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Lele08g2565 494 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Lele08g2565 494 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Lele08g2565 494 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Lele08g2565 494 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Lele08g2565 494 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Lele08g2565 494 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Lele08g2565 494 Gene3D - 72 414 IPR012334 -
Lele08g2565 494 SUPERFAMILY Pectin lyase-like 69 412 IPR011050 -
Lele08g2565 494 FunFam Pectate lyase 72 414 - -
Lele08g2565 494 Pfam Pectate lyase 155 336 IPR002022 -
Lele08g2565 494 PANTHER PECTATE LYASE 18-RELATED 33 413 IPR045032 GO:0030570
Lele08g2565 494 SMART amb_all 147 344 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2565 Lele-ChrLele08 31409071 31414585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2565 21 419 Polysaccharide Lyase AT3G54920 67.322 0.0 573