Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele08g2558 | ATGGCTGGGAAAGAAGAAAACCGTATATTTGTGGGAGGCCTGTCTTGGGACGTAACGGAGCGTCAGCTCGAGCATGCCTTTAGCCGTTGCGGCAAGGTTATTGAATCCCAGATCATGTTGGAAAGGGACACAGGTCGTCCACGTGGATTTGGGTTTATCACATTTGCTGATCGAAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGTGAACTTGGTGATCGCATTATCTCTGTCAACAGGGCCCAGCCCAAAATGGGTTCAGATGATCTAGACCATGGTTACTCATCAGGTGGCAGAGGAAATTATGGGGTGGGAGGCAGGGTAGGGCAGGATGACTGCTTCAAATGTGGTCGACCTGGCCACTGGGCCCGAGACTGTCCTTTGGCAGGAGGAGGCCGTGGTGGGGGTGGCGGTTCATTTTCTTCACGTCCTAGGTTTGGAGGTGCTGGTGGTCATGGGGATCGCCTAGGTGAACGTGATCAATTTATTGATGATCGTTATGATGGAGGACGTTTTGGAGATAGGGACCGCTTTGACAGCCGAGATAACAAATATGGAGGCAACCGTGATCACTATTATAGTGACAGGTACCGGGCTAGTGGAGATAGGTTTGCAAATGATTCATATGGTGGCTCAGACCGTTATCCACAAAATAGTTATGGGAAAGATAGAGGTTATGACAGGTATGGCAGTGCAAGAAGTAATGATAGGTATGGAAGTGGAGCGCCAGCACGAGAGCAAGGAAGGAGTTTTAGGGGCGGCCGACGTGGTGGTCCTTATGACCGTCCAAGCAGGGGTGGGCATCCATCTTCGTTCGACCGGTATTGA | 834 | 0.5084 | MAGKEENRIFVGGLSWDVTERQLEHAFSRCGKVIESQIMLERDTGRPRGFGFITFADRRGMEDAIKEMHGRELGDRIISVNRAQPKMGSDDLDHGYSSGGRGNYGVGGRVGQDDCFKCGRPGHWARDCPLAGGGRGGGGGSFSSRPRFGGAGGHGDRLGERDQFIDDRYDGGRFGDRDRFDSRDNKYGGNRDHYYSDRYRASGDRFANDSYGGSDRYPQNSYGKDRGYDRYGSARSNDRYGSGAPAREQGRSFRGGRRGGPYDRPSRGGHPSSFDRY | 277 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele08g2558 | 277 | Pfam | Zinc knuckle | 115 | 129 | IPR001878 | GO:0003676|GO:0008270 | |
| Lele08g2558 | 277 | Gene3D | - | 1 | 110 | IPR012677 | - | |
| Lele08g2558 | 277 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 109 | IPR035979 | GO:0003676 | |
| Lele08g2558 | 277 | FunFam | glycine-rich RNA-binding protein RZ1C | 1 | 112 | - | - | |
| Lele08g2558 | 277 | Gene3D | - | 111 | 137 | - | - | |
| Lele08g2558 | 277 | PANTHER | SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL | 4 | 269 | - | - | |
| Lele08g2558 | 277 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
| Lele08g2558 | 277 | MobiDBLite | consensus disorder prediction | 135 | 277 | - | - | |
| Lele08g2558 | 277 | MobiDBLite | consensus disorder prediction | 251 | 277 | - | - | |
| Lele08g2558 | 277 | SMART | c2hcfinal6 | 114 | 130 | IPR001878 | GO:0003676|GO:0008270 | |
| Lele08g2558 | 277 | MobiDBLite | consensus disorder prediction | 154 | 204 | - | - | |
| Lele08g2558 | 277 | SUPERFAMILY | Retrovirus zinc finger-like domains | 99 | 134 | IPR036875 | GO:0003676|GO:0008270 | |
| Lele08g2558 | 277 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
| Lele08g2558 | 277 | ProSiteProfiles | Zinc finger CCHC-type profile. | 115 | 129 | IPR001878 | GO:0003676|GO:0008270 | |
| Lele08g2558 | 277 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 78 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele08g2558 | Lele-ChrLele08 | 31341841 | 31346421 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele08g2558 | 9 | 88 | C2H2 Transcription Factor Family | AT2G19380 | 38.750 | 6.46e-12 | 63.5 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele05g2633 | 05 | 42215349 | 42226018 | Lele08g2558 | 08 | 31341841 | 31346421 | hybridization | |
| Lele06g2620 | 06 | 34079897 | 34084455 | Lele08g2558 | 08 | 31341841 | 31346421 | hybridization |