Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2544 ATGATTGGGGCCATGAGTCCTGACATAAAGCAATCTTGGTCAGATCAAGAAAAAGAAGGTGCTAAAGTTTTTAGATGGGTTCGCCATTGTGAGCCTTGGAATAGCTCTTCGTTCTCTCCCCGTGGGACGCTGTGTCAAGGTTCTTTCTCTGTTTCCATGGAGTTTGAAGTGAAGTTAGTAGGGAGCATAGACAACTGCTTCGTATCCCTTCCTCTTCCTCTTATCCAACTTCTGCACTCAACACGCTTGACGCCACTGCCTCCTATTCTCGCTCTCGAGCTTCTCTCTCGCTCTGACGATCTCTGGGTGGTTGCTTGGTCAGGAGCAACTTCCGCTTCTAATGCCATAGAGGTTGCACAACATTTTGCAGATTGCATTTCCTTGCCAGATCATGCTAGAGTTCAAGTAAAAGCTGCTTCTAACGTGTCACACGCTTCTCTAATTACAATAGAACCACACACAGAAGATGACTGGGAAATTTTGGAGCTGAACTCTGAGCAAGCTGAGGCAGCAATTTTAAACCAGATCAGGATTGTCCATGAAGGAATGCGATTTCCTTTGTGGTTGCATGGTCACACAATGATTACATTCTTTGTTTCTTCTGTTATTCCCAAGAAAGCGGTGGTGCAACTCATGCCAGGAACTGAAGTTGCAGTTGCCCCAAAAAGACGTAAAAGATCTTCAAATTCACTTGCAGACTTTCATCAAGACTTCTATAGTAGAGAATACACTACAAAGATGCTTCTCCGTATACAGGATCCAGACAGGTTGTGTCACACAAGTGCTTGTGTCAAAGGAGTTGATCTTCATATGGAACTCACTTCTGCTGCTTTTGTTCACCCAGAAACAAGCAAACAGTTCTCACTCAATAGGCTTCAATTGGTCTCCATAGTTCCAAGAATATCCAACAAGAAGGCTAATGGTACTTCCAGATCGAATATTATGAAAACAAAAGGCAGTGCAACAACTAGGGAAGTTGACTCTGGAAATTTAACTGATGAGAAAGGGTGTCCACAAGCAATTGTTTATCTTCTGCTTTCAGAGTCAGTGGCTAAAGGACATGTGATGGTTGCTAAATCTCTTCGTCAGTATTTAAGAGCTGGTCTGCATTCATTATTGGGTTTGGCTACAAAGGAAGGAAGAACTGTGGCAATGTTCAGTGTATCCAGTAATTTGGAATTCATCGCTAGAGTAGGAAGGGTCTATTTGAAGGCATGTGAAGTTAATTTGGAAAAAGCTATTCCCTCCTTCTCTCTTTCTCCTTGCCACTTCAGAATGTTAAGGCAGGATAATGATGGTGATAATCATATAGATAAGAACAAGCTGACTAGGACTGCTTCAGTTGTCTTTGGGGATCTTGGGGATTGGTCTGTCCATAATGAAGTTATTAATGTTTTTTCGGATGAATCCCATTCTGAAGCAGATGAAGAGGTTGCAAATGAGTCTGAGAATCAAAATGGACTACAGCATCTTCTAAGAGTATGGTATATTGCACAACTTGATGCAGTTGCTTCCTTTACTGGTTTGGAGGTTAATGCACTGGCATTGGGAAGTAAAACCTTACTTCATTTTGAAGTGAGTTACATAAAGCTTGGGACTAATGGAAAGGTTCAGTTAGCTTCTAATTCATCAGAAAACAGAAATAAGACAGCTGAAATATTGTTTTTATTGACCATTAGTAAAGATTCTTTGCATCATGGAAAAAATACTGCATATGAAATTGCACTTGGTGAAAGAAACAGTAATCCAGCAGATCAACAGCTGTTGAAAAGCCTGAAGTTCACTGATCCTGTCTCTATCCAATCTCTAGAAGATAAAATATCTGAAGAACATATTACTTCAGAAGTAACTAGCCTGGATTGGATGGAGGAAACTGTTTCTGATGTTATCAATAGGTTGACAGTATTGTTATCTTCTGCTTCTGGTATGTGGTTTGATTCATATGACTTACCACTCCCAGGACACGTTCTTATATATGGACCTTCAGGCTCTGGCAAAACTTTACTGGCAAGAACTGTTGCAAAATACTTTGAGAAACATGAAGACATCTTAGCACACATAATTTTTGTTTCTTGTTCAAAACTAGCTTCGGAGAATGTCCCAATAATCCGGAAAGAAGTTAATAACAACATTATGGAAGCTTTAGATCATGCACCTTCAATTGTCATCTTTGATGATCTTGATAGCATAATTTTCACCTCTGACTCGGAAGGGCCTCAACCCTCAATGTCTGCTGCTGGACTCACAAGCTTTCTGGTTGACATTATTGATGAATATGGGGAGAGAAGGCGAAAATCATGTGGATTTGGACCAATAGCCTTCATAGCTTCTGTACAAGCTCTTGAGAAGATACCACAATCTTTAAGCTCGTCAGGGAGGTTTGACTTTCACATACAGCTGCCAACTCCTGCAGCTTCAGAGCGGGGGGCTATGTTGAGGCATGAAATAAAAAGGCGTCACTTGCAATGTGCTGATGACATCCTGCTTGATGTAGCTGTCAAATGTGATGGCTATGATGGTCATGATCTGGAAATATTGGTTGATAGAGCTGTCCATGCTGCTGTTTCCCGCTTTCTCCCATCAAATGCTGCTCTTAGTGAGAATGAGAGTCCTGCTTTACTTATGCAAGATTTCTCTCAGGCAATGCATGATTTTCTTCCGGTTGCAATGCGAGACATTACAAAAGCTGCTTCTGATGGTGGACGCTCTGGATGGGATGATGTGGGAGGTCTTGTTGACATTCAAAACACTATTAAGGAGATGATAGAGTTGCCTTCCAAGTTTCCAAAAACTTTTGCCCAAGCTCCTTTGAGGTTAAGATCGAATGTCCTTTTATATGGGCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCAGCAGCTGCTGCTTGTTCTCTACGTTTCATATCTGTGAAAGGGCCAGAACTGTTGAACAAATACATTGGTGCTTCTGAACAAGCTATAGAATGCTTACTACATATGTCTGGAGTATGGTGGCAAACTATGGAGTTAAGCAACTACGGCAAAGTTAGGGATATATTCTCTAAAGCAGCTGCAGCAGCACCATGTCTACTCTTTTTTGATGAGTTTGATTCTATTGCCCCCAAGAGAGGACATGACAATACCGGAGTCACTGATCGTGTTGTGAATCAGTTTCTGACTGAGTTAGATGGCGTTGAGATTTTAACTGGTGTATTTGTTTTTGCTGCTACCAGAGTAGATTTCACTATTATGGCATTCGAGCTGAAGGTTGAAGTGGAGCAGAAGTTGGTTGAGCACAATAATGTAGATAGTTTAAATTACCTTAAACTCGTGTTTCTACGGCTTTACTATTACGGTAATTGGCTTGAGTCTAGCAAAACTCCCCACAGTGGCCCACCATTGCTAACCCGGAACCTTCTCAAAAAGTGCATTGGAATTGGATTTGACCTCTCTCCTCATCCTCCAACCATGATTTGGTTCCATGATTACCTATGTGAGGTGCCATGGCTTGCAAGTAGGATATTGGATGCTAGAAATAAGAATGTTGAGGGGCTGCTCACGGGAATCTAATCTCTCAGCTATGCCACCACCTCAATTCTTGATCAAAGAAGATACTCGAAGTGGGCAACTGAACGGAGAATTTGTTTATTGGATGTGACAAGATCAGCTCGTTTTGGGATACATGTTCAGTTCAGTAGACCAGATTTGCTTGATGCAGCACTTTTGAGACCAGGCAGGTTAGACCGACTGCTATTCTGCGACTTTCCATCTCAGCAGGAAAGGTTTGAAATTCTTACGGTACTTTCTAGAAAGTTGCCTCTGGCCAGTGATGTAGATTTGGCTGCAGTAGCTCATATGACTGAGGGATTTAGTGGAGCTGATCTCCAAGCTCTCCTTTCAGACGCTCAACTTGCCGCAGTTCATGAAGTCTTGGACGATGTAAAAACCTCTGAGCATGAGAAAAAACCAATTATTACAGACACCCTTCTCAGGGCCACAGCCTCCAGGGCTAGACCATCTGTTTCAGATGAAGAGAAAAGAAGACTTTACAGTATTTATAGCCAGTTCCTAGCTTCAAAGAGATCTGTTGCTACTCAGTCAAGAGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 4119 0.4198 MIGAMSPDIKQSWSDQEKEGAKVFRWVRHCEPWNSSSFSPRGTLCQGSFSVSMEFEVKLVGSIDNCFVSLPLPLIQLLHSTRLTPLPPILALELLSRSDDLWVVAWSGATSASNAIEVAQHFADCISLPDHARVQVKAASNVSHASLITIEPHTEDDWEILELNSEQAEAAILNQIRIVHEGMRFPLWLHGHTMITFFVSSVIPKKAVVQLMPGTEVAVAPKRRKRSSNSLADFHQDFYSREYTTKMLLRIQDPDRLCHTSACVKGVDLHMELTSAAFVHPETSKQFSLNRLQLVSIVPRISNKKANGTSRSNIMKTKGSATTREVDSGNLTDEKGCPQAIVYLLLSESVAKGHVMVAKSLRQYLRAGLHSLLGLATKEGRTVAMFSVSSNLEFIARVGRVYLKACEVNLEKAIPSFSLSPCHFRMLRQDNDGDNHIDKNKLTRTASVVFGDLGDWSVHNEVINVFSDESHSEADEEVANESENQNGLQHLLRVWYIAQLDAVASFTGLEVNALALGSKTLLHFEVSYIKLGTNGKVQLASNSSENRNKTAEILFLLTISKDSLHHGKNTAYEIALGERNSNPADQQLLKSLKFTDPVSIQSLEDKISEEHITSEVTSLDWMEETVSDVINRLTVLLSSASGMWFDSYDLPLPGHVLIYGPSGSGKTLLARTVAKYFEKHEDILAHIIFVSCSKLASENVPIIRKEVNNNIMEALDHAPSIVIFDDLDSIIFTSDSEGPQPSMSAAGLTSFLVDIIDEYGERRRKSCGFGPIAFIASVQALEKIPQSLSSSGRFDFHIQLPTPAASERGAMLRHEIKRRHLQCADDILLDVAVKCDGYDGHDLEILVDRAVHAAVSRFLPSNAALSENESPALLMQDFSQAMHDFLPVAMRDITKAASDGGRSGWDDVGGLVDIQNTIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAIECLLHMSGVWWQTMELSNYGKVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATRVDFTIMAFELKVEVEQKLVEHNNVDSLNYLKLVFLRLYYYGNWLESSKTPHSGPPLLTRNLLKKCIGIGFDLSPHPPTMIWFHDYLCEVPWLASRILDARNKNVEGLLTGIXSLSYATTSILDQRRYSKWATERRICLLDVTRSARFGIHVQFSRPDLLDAALLRPGRLDRLLFCDFPSQQERFEILTVLSRKLPLASDVDLAAVAHMTEGFSGADLQALLSDAQLAAVHEVLDDVKTSEHEKKPIITDTLLRATASRARPSVSDEEKRRLYSIYSQFLASKRSVATQSRDAKGKRATLA 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2544 1372 SUPERFAMILY ADC-like 62 138 IPR009010 -
Lele08g2544 1372 FunFam PeRoXisome assembly factor 1250 1326 - -
Lele08g2544 1372 FunFam Peroxisome biogenesis protein 1 609 803 - -
Lele08g2544 1372 Gene3D - 1250 1352 - -
Lele08g2544 1372 Pfam ATPase family associated with various cellular activities (AAA) 943 1074 IPR003959 GO:0005524|GO:0016887
Lele08g2544 1372 Pfam ATPase family associated with various cellular activities (AAA) 656 801 IPR003959 GO:0005524|GO:0016887
Lele08g2544 1372 FunFam Peroxisome biogenesis factor 1 143 222 - -
Lele08g2544 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 905 1339 IPR027417 -
Lele08g2544 1372 Gene3D - 804 883 - -
Lele08g2544 1372 SUPERFAMILY Cdc48 domain 2-like 144 221 IPR029067 -
Lele08g2544 1372 SMART AAA_5 939 1090 IPR003593 -
Lele08g2544 1372 SMART AAA_5 652 804 IPR003593 -
Lele08g2544 1372 PANTHER AAA-FAMILY ATPASE 271 1071 - -
Lele08g2544 1372 Pfam Peroxisome biogenesis factor 1, N-terminal 148 221 IPR015342 GO:0005524|GO:0005777|GO:0007031
Lele08g2544 1372 CDD AAA 935 1071 - -
Lele08g2544 1372 CDD AAA 649 801 - -
Lele08g2544 1372 Pfam AAA+ lid domain 1271 1315 IPR041569 -
Lele08g2544 1372 Gene3D - 904 993 IPR027417 -
Lele08g2544 1372 Gene3D - 1009 1073 IPR027417 -
Lele08g2544 1372 Gene3D - 602 803 IPR027417 -
Lele08g2544 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 883 IPR027417 -
Lele08g2544 1372 Gene3D - 142 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2544 Lele-ChrLele08 31199102 31218187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2544 653 859 Calmodulin-binding Proteins AT3G56690 31.731 7.72e-14 74.7