Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2534 ATGGGTAATGTTGAAATTCCCAATTGGCTAAAAGGCCTGCCATTGGCTCCGGAATTTCGCCCAACTGATACTGAATTCGCCGACCCGATTGCTTACATTTCAAAGATTGAGAAAGAAGCTAGCGCCTTTGGGATATGTAAGATTATTCCTCCATTACCCAAGCCTTCTAGAAGATATGTCTTCTCTAATTTAAACAAATCTCTTTTGAAGAGCCCGGAATTGGCTTCAGATAGTAATTCAGTTGGAGTTAGTAATTCTTTGAAAATTGTTTCTGGGGATAGTGGTAGTGATGGGGAGGCACGGGCTATGTTTACCACAAGGCATCAAGAACTGGGGCAGAGTATTAAAAGAGCCAAAGGAACAATTCAAAGCCCACTTTTAGGTGTTCACAAGCAAGTATGGCAGAGTGGGGAAATTTATACACTCGAACAGTTTGAGTCTAAATCAAAGGCCTTTGCAAGAAGTGTACTAGGTATAGTTAAGGAGGTTTCTCCCCTGGTTATAGAGGCTATGTTTTGGAAGGCAGCTTCAGAGAAGCCTATATATGTGGAGTATGCCAATGATATGCCTGGGTCTGCTTTTGGAGAATCCAAGGGTCAGTTTCATTACATTCACAGAAGGAGAAGGAAAAAGGCTTATTATCAAAGGGGTCTAGATACCTCAGATTGCCAAGAACCCAAAATGGATAAAATAAGAGATACCAAGATGGGCGAAAGTAAGGCTGCTTCTGCCCATAATCATGCAGACACTTGCTCACAGGCATCAAATTCAACTTCAAACCCGTCCACATTTTCATCAAATGAAGCCCCACATTCTAGTAGGCAGAAGAGTTCAGATTCCAGCAGTGAGATGGAAGGTACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTGCAAGTTATTGCACGTTCACAGGGCTCGCTAACTCGTTTCATGCCAGATGATATTCCTGGTGTTACTTCTCCCATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTGGAGGATCATGAACTTCATAGCATGAATTTTCTTCACATTGGCTCATCAAAGACTTGGTATGCTGTGCCTGGAGATTATGCTTTTGCTTTTGAGGAACTCATCCGCACTGAGGCTTATGGTGGTGATATGGATCACTTAGCTGCTCTGACTCTGTTGGGGGAGAAGACAACCCTTATATCACCGGATGCAGTTGTTGCATCTGGGATCCCTTGTTGCAGGTTGACGCAGAACCCTGGAGAATTTGTTGTGACCTTCCCAAGGGCTTATCATGTAGGATTCAGCCATGGCTTTAACTGCGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTCACAGTGGCCAAGGAAGCTGCAGTGCGAAGGGCTGCAATGAATTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTATTGACTATGTCTTTTGTTTCAAGAGTGCCAAGAACATTATTACCAGGTGTGCGGAATTCCCGTCTGAGAGACCGTCAAAAAGAAGAAAGAGAATTGTTAGTAAAAAGATCTTTTATAGAAGATATGCTGCAAGAAAACAATCTTCTATCCATTCTTCTTGAAAAGCAATCAACTTATCATGCTGTTTTATGGAATGCCGATTTACTCCCAGATCTGAGCAAGGATTCTGCTCAGTTGCCTGACTTAACTTCTACAACTAGAACCTCTATGGCAGACAGTGGGTCAAATTTGAGTTCTGCAGATAAGAGCAACCACAGTTGTCTGCTTGATGAAATGAGCTTGTATATGGAAAATCTGACTGAACTTTATCTTGGTGACGACAGTCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGGATTCTTGGTTTTCCATTCATGACTGTGGTACAACCATCGGAGAGATCAGCGATGGAACTTTTGCCAGTCTCAGGGAATTCTCTCTCTGTTACTGATCCACCTTCAACAAATGAACCATCAAAACTATCATTAATGAACCGTGACAAGGGTTGGAACAACTCTTGCAAATTTTTGAGGCCACGAATTTTCTGTCTGGAGCATGCTGTTCAGATTATGGAGATGCTGCAGTGCAAAGGTGGAGCTAGTGTGCTTGTAATTTGCCATTCAGACTATCAGAAAATCAAGGCACATGCGAGGGCAGTGGCAGAGGAGATAGGCTGTGCTTTTGATTATAAGGAGGTTCCGTTAGATACAGCATCCCCTGAAGATTTGACCTTGATAGATCTCGCGATTGATGGTGAAGAACCCAATGAATGTGAAGAAGACTGGACGTCTAAATTAGGAATTAACCTGCGGCATTGTGTCAGTGCAAGAAAGAACTCTCCATATAAACAAGCTCCTTTCAAATTGGCACTGGGAATGTTGTTCCCCGAGAAATTTCCTGATTCAGATGTCTTATCTGTAAATTGGCAGTCAAAGAGATTTCGGTCCAGAAGGTTGAAGTATTTAGCTCAGGCGAAGGCATGTGATGGGATTCAGAGAAAGAAGGGTGATCAGTTGGAACGAAAGACAGATGGCTCCACTGCAAAAAAGATGCTTCAGTATTCAAGGAGAAAGTTCAGGTCAAAGCAAGGTTGTCTCTCTGGATCAAGCATGGTTCATGTACCCCATAAAGAGTCCATAAATGTGCCAGCTGTCTTGAGTAGAGATTCTGGTAACCAGGTCTCTCAAAATGAGCCTGGCACTGAGAATTCTAGGAATGATTGTGCCCTGTCATGTGTCTTGCAACCTGAAAATCTACTTACTGAAATGACCACTAGTCTGAGTTTGAAAGTTGCTTCTTCACAACCTTCAGATTTCACTCTGGAACCTATGTCAGCGGATGAAAATGTGGGACCAGAGGTCCAGAATCAAACTACAGAGGAATTAAAGATAGAGGGCAAAAGTAGTTGGACAACACCTGATCATTCTATGATGCCTTGTAAGATGGGTGCCTCAGAAATTGAGGATAAGGACGATGAGATTTTGCATGACAAGATAAATTCTAGCTCACTTATCGTTGCTGAAGAAAAAAATATTGACATGCTTACTGAGAACCCTATCACAGAAGAAATTAACACCAATTATAGCAATAGTGTGGATTTTAATGAAGTACATCAAGAATTTGAGCCTGCCCACAAGAGTAACGGGGCGGAAGCTACTTCATCTCCTGTTTCATCGGTAACTCAGCAGACACTTGCCATCATGGAAGAATATTCTAATAGTGCGAGAAAGAATCATAGCACTGAAAGCATGATCTATGATGCACCATTAAAAGAGACAACGGACACTTCTAGTTTGAATGAAAACAACATGGAACTTACTGTAAGTTGTGATAACTCAATAAATGAGCAGACGTCAAAGATTGATGCTCATGAAGTTCCAAAAGAGCTTTGTGCCCTTGCAGACTCCAGCCCTCAATCTACTTCACATGTGGGAAAAGAATCAGAAATCCAGCCAAGAATCATGAATGATGAGGAAATCTGCTCTGGTACTGGCGCTGGGCCATCATTAAACGACTCTTCTGTGTCAATGCGGGAGTGTTCTGCAACTGAGGGAGAGAAATGTGCTAGAGATAGCTTGAATGGAAGCGAAATTCATTTTTCACAAGACTATAGGGAGCTGCCAATCTCTGAAAGTTTGCCAGGCCTTAGGTCAAATACCTGGAAGAGAAGAAACAGGGAATTGGAACGGATACAAGAGATGGATATAAGTTTCCATGGCTTTGTTAGAAGTCCATGTGAAGGGTTGAGATCAAGGGCTTGTAAAGTAGCCTCTGACAGAAGCTTGGTTGAAACCAGCAATTCTGTGGAGGAAAATCTGGAGGTTAAAAGGGCTAGGAGGAAATCATCAAATGTCATGTTGTCTGGCAAGAATAAGAAGGATGCTGTCAAGAGGTCTCACAAGTGTGACCTTGATGGTTGCCATATGAGTTTTATGTCCAAAGCAGAGTTAATGTTGCACAAGCGCAACCGCTGCCCTCTTGATGGGTGTGGAAAGAAGTTCAGATCCCACAAATATGCTGTGCTTCACCAACGTGTCCATGATAATGACAGGCCCCTCAAGTGCCCATGGGAAGGTTGCTCAATGTCATTCAAGTGGGCATGGGCCAGGACCGAGCATATACGGGTGCATACTGGGGAAAAGCCATACCACTGCAAGGTTGAGGGATGTGGCCTTTCGTTTAGATTTGTATCCGATTATAGTAGGCACCGGCGGAAAACGGGGCACTATCTAGTCTCAGGATATCATGAATCTGATATCTTCTGGTTAGGCGTAAAGTTAGGGATAGGATGGTTGTTATCTCGAGGTGGTGAAAGTTTAGTTCGGAGAATTTTTTATCTTTCTGGATTATTTGACAGCAGATTTAGCAGCAGCAGCAGCAAGCTCTCCAGAAGAGGAGAAATCATATTGTTGGTTGGTCATATTCTTGATGGCCTACATTTGTGA 4455 0.4303 MGNVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKIIPPLPKPSRRYVFSNLNKSLLKSPELASDSNSVGVSNSLKIVSGDSGSDGEARAMFTTRHQELGQSIKRAKGTIQSPLLGVHKQVWQSGEIYTLEQFESKSKAFARSVLGIVKEVSPLVIEAMFWKAASEKPIYVEYANDMPGSAFGESKGQFHYIHRRRRKKAYYQRGLDTSDCQEPKMDKIRDTKMGESKAASAHNHADTCSQASNSTSNPSTFSSNEAPHSSRQKSSDSSSEMEGTAGWKLSNSPWNLQVIARSQGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHIGSSKTWYAVPGDYAFAFEELIRTEAYGGDMDHLAALTLLGEKTTLISPDAVVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLTVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRTLLPGVRNSRLRDRQKEERELLVKRSFIEDMLQENNLLSILLEKQSTYHAVLWNADLLPDLSKDSAQLPDLTSTTRTSMADSGSNLSSADKSNHSCLLDEMSLYMENLTELYLGDDSLPCHFQTDSGALACVGCGILGFPFMTVVQPSERSAMELLPVSGNSLSVTDPPSTNEPSKLSLMNRDKGWNNSCKFLRPRIFCLEHAVQIMEMLQCKGGASVLVICHSDYQKIKAHARAVAEEIGCAFDYKEVPLDTASPEDLTLIDLAIDGEEPNECEEDWTSKLGINLRHCVSARKNSPYKQAPFKLALGMLFPEKFPDSDVLSVNWQSKRFRSRRLKYLAQAKACDGIQRKKGDQLERKTDGSTAKKMLQYSRRKFRSKQGCLSGSSMVHVPHKESINVPAVLSRDSGNQVSQNEPGTENSRNDCALSCVLQPENLLTEMTTSLSLKVASSQPSDFTLEPMSADENVGPEVQNQTTEELKIEGKSSWTTPDHSMMPCKMGASEIEDKDDEILHDKINSSSLIVAEEKNIDMLTENPITEEINTNYSNSVDFNEVHQEFEPAHKSNGAEATSSPVSSVTQQTLAIMEEYSNSARKNHSTESMIYDAPLKETTDTSSLNENNMELTVSCDNSINEQTSKIDAHEVPKELCALADSSPQSTSHVGKESEIQPRIMNDEEICSGTGAGPSLNDSSVSMRECSATEGEKCARDSLNGSEIHFSQDYRELPISESLPGLRSNTWKRRNRELERIQEMDISFHGFVRSPCEGLRSRACKVASDRSLVETSNSVEENLEVKRARRKSSNVMLSGKNKKDAVKRSHKCDLDGCHMSFMSKAELMLHKRNRCPLDGCGKKFRSHKYAVLHQRVHDNDRPLKCPWEGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDYSRHRRKTGHYLVSGYHESDIFWLGVKLGIGWLLSRGGESLVRRIFYLSGLFDSRFSSSSSKLSRRGEIILLVGHILDGLHL 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2534 1484 Pfam jmjN domain 17 50 IPR003349 -
Lele08g2534 1484 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1351 - -
Lele08g2534 1484 ProSiteProfiles Zinc finger C2H2 type domain profile. 1386 1412 IPR013087 -
Lele08g2534 1484 SMART JmjN_1 15 55 IPR003349 -
Lele08g2534 1484 MobiDBLite consensus disorder prediction 245 291 - -
Lele08g2534 1484 ProSitePatterns Zinc finger C2H2 type domain signature. 1388 1412 IPR013087 -
Lele08g2534 1484 ProSiteProfiles Zinc finger C2H2 type domain profile. 1326 1355 IPR013087 -
Lele08g2534 1484 SUPERFAMILY Clavaminate synthase-like 292 457 - -
Lele08g2534 1484 MobiDBLite consensus disorder prediction 559 578 - -
Lele08g2534 1484 ProSitePatterns Zinc finger C2H2 type domain signature. 1358 1380 IPR013087 -
Lele08g2534 1484 SUPERFAMILY beta-beta-alpha zinc fingers 1326 1363 IPR036236 -
Lele08g2534 1484 ProSiteProfiles Zinc finger C2H2 type domain profile. 1356 1385 IPR013087 -
Lele08g2534 1484 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Lele08g2534 1484 SMART cupin_9 291 460 IPR003347 -
Lele08g2534 1484 ProSiteProfiles JmjC domain profile. 291 460 IPR003347 -
Lele08g2534 1484 ProSitePatterns Zinc finger C2H2 type domain signature. 1328 1350 IPR013087 -
Lele08g2534 1484 SMART c2h2final6 1386 1412 IPR013087 -
Lele08g2534 1484 SMART c2h2final6 1303 1325 IPR013087 -
Lele08g2534 1484 SMART c2h2final6 1326 1350 IPR013087 -
Lele08g2534 1484 SMART c2h2final6 1356 1380 IPR013087 -
Lele08g2534 1484 MobiDBLite consensus disorder prediction 235 291 - -
Lele08g2534 1484 Gene3D Cupin 9 464 - -
Lele08g2534 1484 SUPERFAMILY beta-beta-alpha zinc fingers 1366 1408 IPR036236 -
Lele08g2534 1484 Gene3D Classic Zinc Finger 1323 1410 - -
Lele08g2534 1484 FunFam Probable lysine-specific demethylase ELF6 1353 1382 - -
Lele08g2534 1484 Pfam JmjC domain, hydroxylase 324 443 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2534 Lele-ChrLele08 31064667 31072403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2534 1 861 C2H2 Transcription Factor Family AT5G04240 57.403 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g2534 JmjC 7.4e-36 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2613 05 41962640 41971711 Lele08g2534 08 31064667 31072403 hybridization
Lele06g2595 06 33787406 33795217 Lele08g2534 08 31064667 31072403 hybridization