Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2531 ATGGAGTTTTCGAAGGTCAATGACCATATTAATGGCGCCTTCGAGCTTTGCAATGGTGGTAGAACCGTCTGTAATAGTGATCCTCTGAACTGGGGAATGGCGGCGGAGGCTTTGAAGGGAAGCCATTTGGACGAGGTGAAGCGGATGGTGGAGGAATACCGGAAACCGGTGGTGCGCATCGCCGGTAAGTCACTGAGGATATCGCAGGTGGCCGCGATTGCGAACCCCGACGCCGGTGTGGCGGTGGAGCTGTCGGAGGAGGCTCGTGCCGGCGTGAAGGCCAGCAGCGATTGGGTCATGGAAAGCATGAACAAAGGCACTGACAGCTACGGAGTTACCACCGGTTTCGGTGCCACCTCACACAGGAGAACCAAGCAGGGTGGGGCCCTCCAGAACGAACTCATCAGATTCTTGAACGCTGGGATCTTCGGCAATGGCATAGAATCGTCTCACATGTTGCCTCACTCGGCCACAAGAGCCGCCATGCTGGTCAGAATCAACACTCTTCTTCAAGGTTACTCCGGCATCAGATTTGAGATCTTGGAAGCCATGACCAAGTTCCTTAACCACAACGTAACCCCATGCCTTCCTCTCCGGGGCACCATCACTGCTTCCGGCGACCTTGTACCTCTGTCTTATGTCGCCGGCCTCTTGATCGGCCGACCCAACTCCAAATCCATAGCTCCTGATGGCAAAGTCATCTCTCCTAAAGAAGCCTTTCAACTAGCCGGAATCAATGGTGGCTTCTTTGAACTTCAACCCAAAGAGGGTCTGGCTCTTGTTAATGGCACTGCTGTAGGATCTGCTTTAGCCTCCATGGTTCTTTTTGAGGCCAACATTCTTGGTGTCCTTTCGGAAGTCTTGTCAGCGATTTTCGCCGAGGTTATGCAGGGCAAGCCGGAGTTTACCGATCACTTGACACATAAACTGAAACACCATCCCGGCCAAATTGAAGCTGCTGCTATAATGGAACACATTTTAGATGGAAGCTCTTATGTTAAAGCAGCTCAGAAGCTTCATGAGATTGATCCTCTTCAGAAGCCTAAACAAGATAGGTATGCTCTGAGAACTTCTCCTCAATGGCTTGGACCTCAGATTGAAGTGATCAGATACGCTACGAAGATGATCGAGAGAGAGATCAACTCTGTGAATGACAATCCATTGATTGATGTTTCAAGAGGCAAGGCACTTCATGGAGGAAACTTCCAAGGTACCCCAATTGGTGTTTCAATGGACAACACTCGTTTGGCTCTTGCTTCCATTGGAAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTTCTACAACAATGGCTTACCTTCGAACCTCTCCGCTAGCCGATACCCGAGCTTGGATTACGGCTTCAAAGGAGCCGAAATCGCCATGGCTTCATACTGTTCAGAGCTTCAATTCCTTGCAAATCCTGTCACAAACCATGTTCAGAGCGCAGAGCAACACAACCAAGATGTGAACTCTTTAGGGCTAATTTCCTCAAGAAAAACAGCTGAAGCTGTGGAGATTCTGAAACTCATGTCCTCCACCTACTTAATTGCACTATGCCAAGCCATTGATCTGAGGCATTTGGAAGAGAACTTAAAGAACACTGTGAAGAACGCAGTGAACCAAGTCGCCAAGAAGGTCCTGACAATGGGTGTCAACGGAGAATTACTCCCTTCAAGATTCTGCGAAAAGGACTTGCTCACAGTTGTAGACCGTGAACATGTGTTTGATTACATTGATGATCCTTGCAGTGCAACATACCCATTAATGCAGAAACTGAGACAAGTTCTGGTTGATCATGCTCTGCAAAATGGCAACAGAGAAAATGATGCAAACACATCAATTTTCCTAAAGATTGCAGCTTTTGAGAAAGAACTCAAGACCCTTTTGCCCAAAGAAGTAGAAAGTGCAAGGATTGAGGTTGAGAATGGGAAATCTGCAATCCCTAACAGGATCAAAGAATGCAGATCTTATCCATTGTACAGATTTGTGAGAGAAGAACTTGGGACTGGTTTGCTCACAGGTGAGAAAGTGAGGTCACCTGGTGAAGAATTTGACAAAGTGTTCACTGCAATGTGCGAAGGAAAGTTGATTGATCCTTTGTTAGATTGCCTCAAGGGGTGGAATGGGGCTCCTCTGCCATTATGTTAG 2157 0.4771 MEFSKVNDHINGAFELCNGGRTVCNSDPLNWGMAAEALKGSHLDEVKRMVEEYRKPVVRIAGKSLRISQVAAIANPDAGVAVELSEEARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGIESSHMLPHSATRAAMLVRINTLLQGYSGIRFEILEAMTKFLNHNVTPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIAPDGKVISPKEAFQLAGINGGFFELQPKEGLALVNGTAVGSALASMVLFEANILGVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRYATKMIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRYPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSSTYLIALCQAIDLRHLEENLKNTVKNAVNQVAKKVLTMGVNGELLPSRFCEKDLLTVVDREHVFDYIDDPCSATYPLMQKLRQVLVDHALQNGNRENDANTSIFLKIAAFEKELKTLLPKEVESARIEVENGKSAIPNRIKECRSYPLYRFVREELGTGLLTGEKVRSPGEEFDKVFTAMCEGKLIDPLLDCLKGWNGAPLPLC 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2531 718 Gene3D - 531 652 IPR023144 -
Lele08g2531 718 SUPERFAMILY L-aspartase-like 27 718 IPR008948 GO:0003824
Lele08g2531 718 FunFam Phenylalanine ammonia-lyase 265 575 - -
Lele08g2531 718 FunFam Phenylalanine ammonia-lyase 531 652 - -
Lele08g2531 718 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 200 216 IPR022313 GO:0016841
Lele08g2531 718 Pfam Aromatic amino acid lyase 65 544 IPR001106 -
Lele08g2531 718 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 27 708 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lele08g2531 718 PANTHER HISTIDINE AMMONIA-LYASE 24 718 IPR001106 -
Lele08g2531 718 CDD PAL-HAL 63 528 IPR001106 -
Lele08g2531 718 Gene3D - 18 264 IPR024083 -
Lele08g2531 718 FunFam Phenylalanine ammonia-lyase 19 264 - -
Lele08g2531 718 Gene3D Fumarase/aspartase (Central domain) 265 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2531 Lele-ChrLele08 31037404 31040966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2531 16 718 Monolignol Biosynthesis Gene Families AT3G53260 80.845 0.0 1212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2610 05 41938883 41942944 Lele08g2531 08 31037404 31040966 hybridization
Lele06g2593 06 33764328 33767936 Lele08g2531 08 31037404 31040966 hybridization