Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2528 ATGGGGAGCAAATGGAAGAAGGCGAAGCTGGCTCTAGGTTTGAATCTGTGTGTATTCATTCCCAGAACTTCAGACGACTTGGATTCGCCTCCGGCTACGGATGTTTCCGAGAGGTTATCTGATGCTGCTCTGCTTTCGCCTGTTAATTGGGACATGGCTTCCTCACGATCGAGGTCTGCCGCGCCGCCGCCGGCTTCTTCTCACGCTGTAAAGCTGTCGAAAAGTGCGAGCAAATCTTCCAAGCAAACCTGCTCAATATGCTTAACCAAAATGAAACAAGGATGTGGGCATGCTTTGTTCACCGCAGAATGTTCGCATTCCTTCCATTTTCACTGCATCGCTTCGAATGTGAAACATGGAAACAAAATATGTCCGGTGTGCCGAGCGAAGTGGAAGGAAATACCCTTACTGGATCCCAGTTTGGATCCTCTTCCAGGCAGGGTTTCTCCGAATAATGCTTTCATGGCAGTTGTCCACAGCCTTCCTCGACCGCCCCCTCGACGAGATTTGAATAGGCGACATGTTGTTCCACTTTATCAGGCTCCGGAGCCAGGTGTTTATGATGATGATGAATCCTTAGATCTCCAACATGTATGTTCTGGTAAGAGTGTTGCCGATGCAGGTGCTGTTAAAACAATAGAGATTAAAACATACCCTGAAGTGTCGGTTGCTCCACAGTCCAACTCTTATAGTAACTTTAATGTCTTGGTCCATCTCAAGGCCACTGCTGTAGCAACAGCAACCAGAACACCCAACCTCAGTAGAAATCATGCTAGCTCGACGCAGGTTTCTCATACTCCGCGTGCCCCTGTTGACCTAGTGACGGTGCTTGATATTAGCGGTAGCATGGCTGGCACTAAGCTCGCACTACTAAAAAGAGCCATGGGATTTGTTATCCAGAATTTAGGTTCAAATGACCGGCTATCAGTTATTGCTTTCTCTTCTACAGCTCGCCGTCTGTTCCCTCTACGCAGAATGTCTGACTCTGGGCGGCAACAAGCACTGCAAGCTGTTAACTCTTTGGTTGCAAATGGGGGTACGAACATCGCCGAGGGCCTGAGAAAAGGCGCCAAGATAATGGAAGAACGAAGAGAGAAAAATCCTGTTGCCAGCATAATACTGTTATCTGATGGGCAAGATACTTACACTGTTGGCGGTTCTGGTACTAACCAACCGCAACCAAACTACCATTTGCTTCTGCCCATGTCTATCAGTAATCGTGGCACTTCAGCGTTCCAGATTCCTGTGCATGCTTTCGGATTTGGTGCGGATCATGATGCCTCATCAATGCACTCAATTTCAGAGAATTCTGGAGGGACCTTTTCCTTCATTGAGGCTGAATCTGTGATACAGGATGCATTTGCACAGTGCATCGGCGGACTTTTGAGCGTATTGGTTCAGGAGCTGCAAGTCGCAATCGAGTGCATAGATGCCAATCTCAACCTTGTCTCGCTTAAGGCTGGAAGTTATCCGAGCCGTGTGACGACTGGTGGACGCCAAGGATTTATTGATGTTGGAGATTTGTATGCTGATGAGGAGAGGGATTTCCTAGTCTCAGTCAACGTCCCAGCTGCTTCTGGCAGCGAAACATCGTTGATAAAAGTCAACTGTGTTTACAAGGATCCATTAACTCAGGAGACAACGATATCAGAAAGTGAAGAAGTAAAGCTTGAGAGGCCTGAAAAAGTTGGGCAAGTGATTAAGTCACTTGAAGTGGACAGACAGCACAACAGGCTTCAAGCAGCTGAAGCAATGGCCCAAGCACGAAGCGCAGCTGAACATGGAGATTTAACAGGTGCGGTATCAATCCTCGAAAACTGCAGGAAAACGCTCTGGGAGTCTATTTCGGCCAGATCTCAGGATCGCCTATGCCTCGCATTGGACGCTGAACTCAAGGAAATGCAAGAGAGGATGGTGAGTCGGCACGTGTATGAAGCATCGGGGAGAGCATACATTCTTTCTGGGCTGAGTTCCCACTCTTGGCAAAGAGCCACAGCAAGAGGCGATTCCACGGATAGTTCAAGTCTCGTACAGGCATATCAGACCCCATCGATGGCCGAGATGCTTACTCGATCTCAAGCCTCGTTTCTAGGTAGTCCATCAGGCCAGAGGCTTCTCCAGCCATTGTTGTCATACAGATCACAAACGAAGCCAAGAGGGGGATGGAGGGTAGTTGGAGAAATTCTTACAGAAAAAATGCATCAGCAAGCTATATATACGACTGAACCACCACGGATGTTGGAATTTCTCAGGGTTAAGGTTTTTGTTGTCATTAATGAATGTTATTGTCTTTTTGGGGGGATTCTGTTGTACATACGGTGGAATGGTTTTTGCCCCGAGAACTGGGTATGTATTTGTGCAGATGGTTGGGATGAACGAACTGATGAGTAA 2391 0.4768 MGSKWKKAKLALGLNLCVFIPRTSDDLDSPPATDVSERLSDAALLSPVNWDMASSRSRSAAPPPASSHAVKLSKSASKSSKQTCSICLTKMKQGCGHALFTAECSHSFHFHCIASNVKHGNKICPVCRAKWKEIPLLDPSLDPLPGRVSPNNAFMAVVHSLPRPPPRRDLNRRHVVPLYQAPEPGVYDDDESLDLQHVCSGKSVADAGAVKTIEIKTYPEVSVAPQSNSYSNFNVLVHLKATAVATATRTPNLSRNHASSTQVSHTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLRRMSDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEERREKNPVASIILLSDGQDTYTVGGSGTNQPQPNYHLLLPMSISNRGTSAFQIPVHAFGFGADHDASSMHSISENSGGTFSFIEAESVIQDAFAQCIGGLLSVLVQELQVAIECIDANLNLVSLKAGSYPSRVTTGGRQGFIDVGDLYADEERDFLVSVNVPAASGSETSLIKVNCVYKDPLTQETTISESEEVKLERPEKVGQVIKSLEVDRQHNRLQAAEAMAQARSAAEHGDLTGAVSILENCRKTLWESISARSQDRLCLALDAELKEMQERMVSRHVYEASGRAYILSGLSSHSWQRATARGDSTDSSSLVQAYQTPSMAEMLTRSQASFLGSPSGQRLLQPLLSYRSQTKPRGGWRVVGEILTEKMHQQAIYTTEPPRMLEFLRVKVFVVINECYCLFGGILLYIRWNGFCPENWVCICADGWDERTDE 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2528 796 Pfam VWA / Hh protein intein-like 621 693 IPR032838 -
Lele08g2528 796 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 82 693 - -
Lele08g2528 796 MobiDBLite consensus disorder prediction 54 74 - -
Lele08g2528 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 134 IPR013083 -
Lele08g2528 796 Pfam von Willebrand factor type A domain 272 455 IPR002035 -
Lele08g2528 796 Pfam RING-like zinc finger 84 113 IPR001841 -
Lele08g2528 796 ProSiteProfiles VWFA domain profile. 272 458 IPR002035 -
Lele08g2528 796 SUPERFAMILY RING/U-box 79 134 - -
Lele08g2528 796 CDD RING-H2 84 128 - -
Lele08g2528 796 SMART ring_2 84 127 IPR001841 -
Lele08g2528 796 SMART VWA_4 270 454 IPR002035 -
Lele08g2528 796 Gene3D von Willebrand factor, type A domain 272 459 IPR036465 -
Lele08g2528 796 ProSiteProfiles Zinc finger RING-type profile. 84 128 IPR001841 -
Lele08g2528 796 SUPERFAMILY vWA-like 267 458 IPR036465 -
Lele08g2528 796 CDD vWA_C3HC4_type 271 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2528 Lele-ChrLele08 31001300 31005582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2528 51 128 C3H Transcription Factor Family AT1G57730 35.366 1.40e-06 47.8