Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2526 ATGATCGGACCCAATTTCATGGATGAGATAGACTGCGGCAGCTTCTTCGACCACATTGACGACCTCCTCGATTTCCCAGCCGAAGATGTCGACGCCGCCTCCTTGTCCTCCACCGCCGTCAATTGCAACTCCTTCCCCACCGTCTGGCCTGGCGAGTCCGACTCCTTGGCCGGCTCCGAGTCTCTCTTCTCCGCCAACAACGCCTCTGACCTCTCCGCCGAGCTCTCGGTTCCGTATGAAGACATTGTCCAGTTGGAATGGCTTTCGAACTTTGTGGAGGACTCGTTCACTGGTGGAAGCCTCACCATGAAGAAAGTGGAGCAATCTTGCATCACCAATAATAACGACTCGGCGCACAACCAATTCCACACTTCAAGCCCGGTCTCTGTCCTTGAGAGCAGCAGCTCCTGCACCGTGGAGAAGCCGGTGTCGGCGCCACCTCGATGCCCGCCGGAAATGGTCATCCCCGTGCCATGTGGTGGACGTGCACGCAGCAAGCGCCCACGTCCTGCCACATTCAAGCCTCGTCCAGCGATGCAGCTCATTTCCCCTGCATCCTCTGTCGGCGAAAACACACAGAGAAATTCAGATTGTGAGAATTTCGTGGAGTCTCATCCGGTGATCAAGATACCGAAGCAATCTTCAGGGGAGCACAAGAAGAAGAAGAAGATCAAATTCACTTGTCCATTAGGCCCTGCTGATATGAATCAGCAGAATAATAATGGTTCATCACAAGCAGTGAGGAAATGTATGCATTGTGAGATAACAAAAACCCCACAATGGAGGGCAGGTCCAATGGGGCCAAAAACACTATGCAATGCTTGTGGGGTTCGATACAAATCCGGGAGGCTATTCCCGGAATACAGACCGGCGGCTAGTCCGACATTTTGCCCATCGTTGCACTCAAATTCCCATAAGAAGGTGCTCGAAATGAGAAGCAAAGCACCAGAAGAAACTGATGATGCTTCAGCAGAGCTCATTCCAAACACTACCAGCAGCCTTACCCTGGAATACATGTGA 1020 0.5245 MIGPNFMDEIDCGSFFDHIDDLLDFPAEDVDAASLSSTAVNCNSFPTVWPGESDSLAGSESLFSANNASDLSAELSVPYEDIVQLEWLSNFVEDSFTGGSLTMKKVEQSCITNNNDSAHNQFHTSSPVSVLESSSSCTVEKPVSAPPRCPPEMVIPVPCGGRARSKRPRPATFKPRPAMQLISPASSVGENTQRNSDCENFVESHPVIKIPKQSSGEHKKKKKIKFTCPLGPADMNQQNNNGSSQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRSKAPEETDDASAELIPNTTSSLTLEYM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2526 339 SMART GATA_3 244 294 IPR000679 GO:0006355|GO:0043565
Lele08g2526 339 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 248 307 - -
Lele08g2526 339 FunFam GATA transcription factor 239 325 - -
Lele08g2526 339 ProSitePatterns GATA-type zinc finger domain. 250 275 IPR000679 GO:0006355|GO:0043565
Lele08g2526 339 PANTHER GATA TRANSCRIPTION FACTOR 15 319 - -
Lele08g2526 339 CDD ZnF_GATA 249 296 IPR000679 GO:0006355|GO:0043565
Lele08g2526 339 MobiDBLite consensus disorder prediction 324 339 - -
Lele08g2526 339 MobiDBLite consensus disorder prediction 312 339 - -
Lele08g2526 339 Pfam GATA zinc finger 250 283 IPR000679 GO:0006355|GO:0043565
Lele08g2526 339 ProSiteProfiles GATA-type zinc finger domain profile. 244 280 IPR000679 GO:0006355|GO:0043565
Lele08g2526 339 Gene3D - 244 294 IPR013088 GO:0006355|GO:0008270
Lele08g2526 339 PIRSF Txn_fac_GATA_plant 2 335 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2526 Lele-ChrLele08 30972866 30973987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2526 19 314 C2C2-Gata Transcription Factor Family AT4G32890 36.093 1.57e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele08g2526 GATA 5.7e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2605 05 41870762 41871906 Lele08g2526 08 30972866 30973987 hybridization
Lele06g2589 06 33704682 33705884 Lele08g2526 08 30972866 30973987 hybridization