Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2482 ATGTCGGGAAACACAAGTTGCACTGTTTACATTGGCAATCTAGATGAGAGAGTCACGGAGAGGATCTTATATGATATATTAATTCAAGCGGGACGAGTGGTGGACCTGTATATTCCTAGAGATAAGGAATCTGAGAAACCTAAAGGATTTGCCTTTGCAGAATACGAAAGTGAGGAGATTGCAGATTATGCTGTCAGGCTTTTCTCAGGCCTTGTGACACTCTATAAGAGAACACTTAAGTTTGCGATATCTGGTCAAGACAAACTTACTCCAAATGGTTCTGGAGTGGCTACACCGTCATCAAATTCTTCTCACCGATCGAGACCCCACCCTGTGCCAATAAATAATACAGAAATTTCTCCGCACTCTGCTAGGTTACCAACACCTAGCCGAATTTCAGATAATCCCGGTAATTACTCCCGAGATACCCACCGGGTAGTTGACCAATCTAGTGAGTATGGATCTCTCTACAATGGCAACGATTATGAATACAGCCGGAGAGTCTTTGGGCCAACATTGGATAGCATTAGCCGGTATAGGTCACGCCGCTATGATACGAGTAACCCAATCTCTTACCCATATTACTAA 588 0.4354 MSGNTSCTVYIGNLDERVTERILYDILIQAGRVVDLYIPRDKESEKPKGFAFAEYESEEIADYAVRLFSGLVTLYKRTLKFAISGQDKLTPNGSGVATPSSNSSHRSRPHPVPINNTEISPHSARLPTPSRISDNPGNYSRDTHRVVDQSSEYGSLYNGNDYEYSRRVFGPTLDSISRYRSRRYDTSNPISYPYY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2482 195 SMART rrm1_1 8 82 IPR000504 GO:0003723
Lele08g2482 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Lele08g2482 195 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Lele08g2482 195 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 192 - -
Lele08g2482 195 MobiDBLite consensus disorder prediction 90 152 - -
Lele08g2482 195 Gene3D - 2 91 IPR012677 -
Lele08g2482 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2482 Lele-ChrLele08 30476717 30478223 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2562 05 41364240 41367499 Lele08g2482 08 30476717 30478223 hybridization
Lele06g2544 06 33181671 33184065 Lele08g2482 08 30476717 30478223 hybridization