Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2475 ATGAGGACGATGAATCTTCTTGTGTTTTTATTCTTCTCTGTGACGGCGTCATGCTATATGGCGGTGGCCAAGGTGGTGCTGATTGGGAATAACGTCACTCTATCCTTCGACGACATTGAAGCTAATTTTGCTCCAGCGATGAAGGGTTCTGGAGAATGTGGGTTCTTGTATATTGCAGAGCCGGTTGATGCTTGTACAGAACTGACAAACAATGTTGAACCGCTTTCAAATACAAGTTCACCTTTTGTTTTAATAGTTAGAGGGGGGTGTAGCTTTGAAGAGAAAGTCAGAAGAGCACAAAAGGCTGGCTTCAAAGCGGCAATTGTGTATGACAATGAAGACGATGGTGTCTTAGTTTCAATGGCAGGAAATTCAGGCGGTATAAAAATACATGCAGTATTTGTAAGTAAAGCCTCAGGTGAAATACTGAAAAGATACTCTGGACTGACTAACATCGAAGTGTGGCTAATTGCAAGTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTCATTTCCCTACTAGCAATGTCAGCAGTTCTGGCTACTTGTTTCTTTGTCCGGAGGCATCGCATACGAAGGGAAAGGCCTCAAGCTTCTCGTGTTCTTGAGTTTCATGGAATGAGCAGTCGCCTAGTGAAAGCAATGCCTAGTTTGTTATTTACTGCTGTTTTAGAGGATAATTGTACATCAATGACATGTGCAATATGCCTTGAAGACTATTGTGTTGGAGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCTTGCGTGGATTCTTGGCTTACCTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGATGCTAGGACTGGTCTACCTGATCCTCCGCCTTCAGAATCCACACCTTTGCTTTCATCTGGCCCAGCATCTGCAGCATCCTCCGTAGCATCATCTGTGAGATCTTCATTAGCGTCATCTTCTGCAATACAGATTGGTCGGGCATCATCACAGTCCCCATCTGTTTCTCGGGACCATTCTTTGGCTAGTACTCCCTACATTCAACCATCATTTAGGTCCCATCACCAATCTCCCTTCATGAGTGTCAGTCGAAGCTCAGCAGATCTTAGGAATGCATCCCAGAGATCTCAAGCTTCTCATTTGAATTCTCCATACCCATCAATGTCATCAATGAACTCAAGGTACTTGTCTCCACATATTCGAAGTCCGAGCTATGTTTCAGGAAGTTACATTGGTTCTTCTAGTCATTGTAATCACCCACTTCATCATAGCGAGTCAGCAGCGAGTTTTTCTCCATTTGCTTCTGCCCAGTCCCTTCCAGAATGCTGA 1323 0.4407 MRTMNLLVFLFFSVTASCYMAVAKVVLIGNNVTLSFDDIEANFAPAMKGSGECGFLYIAEPVDACTELTNNVEPLSNTSSPFVLIVRGGCSFEEKVRRAQKAGFKAAIVYDNEDDGVLVSMAGNSGGIKIHAVFVSKASGEILKRYSGLTNIEVWLIASFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASRVLEFHGMSSRLVKAMPSLLFTAVLEDNCTSMTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLPDPPPSESTPLLSSGPASAASSVASSVRSSLASSSAIQIGRASSQSPSVSRDHSLASTPYIQPSFRSHHQSPFMSVSRSSADLRNASQRSQASHLNSPYPSMSSMNSRYLSPHIRSPSYVSGSYIGSSSHCNHPLHHSESAASFSPFASAQSLPEC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2475 440 CDD mRING-H2-C3H2C2D_ZSWM2 234 277 - -
Lele08g2475 440 MobiDBLite consensus disorder prediction 348 385 - -
Lele08g2475 440 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Lele08g2475 440 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 23 157 - -
Lele08g2475 440 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 159 292 - -
Lele08g2475 440 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 195 282 - -
Lele08g2475 440 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lele08g2475 440 SMART ring_2 235 276 IPR001841 -
Lele08g2475 440 SUPERFAMILY RING/U-box 228 289 - -
Lele08g2475 440 CDD PA_C_RZF_like 11 164 IPR044744 -
Lele08g2475 440 Pfam PA domain 63 143 IPR003137 -
Lele08g2475 440 Gene3D - 17 157 - -
Lele08g2475 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 282 IPR013083 -
Lele08g2475 440 SUPERFAMILY PA domain 81 150 IPR046450 -
Lele08g2475 440 Pfam Ring finger domain 234 277 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2475 Lele-ChrLele08 30438360 30444156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2475 23 439 C3H Transcription Factor Family AT1G22670 47.100 2.57e-109 327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2557 05 41324997 41330413 Lele08g2475 08 30438360 30444156 hybridization
Lele06g2539 06 33145952 33151372 Lele08g2475 08 30438360 30444156 hybridization