Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2461 ATGACATCACCTCACCAGTTTTCTGAGAGGTCTTCAATGGCGGATATGGATCAATCATGTGTGCCACCAGGATTTAGATTTTATCCAACAGAGGAAGAACTTGTAGGATATTACCTCAAGAGGAAGATTAACTCTCTCAAAATCAACCTAGATGCAATTGTTGAGCTTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGATGCAAGCTAGGATATGAGGAGCAGAACGAATGGCTGTTGAAAAAGTCCGAAATATTGAACTCATTGGTAATGCAGGAAGAAGGATGGGTAGTGTGCCGAGCATTCAAAAAGCCAAGTCCTAGTCATCATGTGAGGGCACGTTTTGAAGCACAGTGTTATTTCAGAGATCATATGAGCGGCCATGGTGGAAGGCCATTTTCTGAGATTCTGAATCAAACCCATCATTTTCTGAATAACAGTAACTCTCATCATCAAGGTACAAGCCTAAGTCCTTTAGTCAATTTGGATCAGCAGCAACAGCAACAGCTTGTTGATCTTCCTCAACTAGATAGCCCTAGTTTGGGAATAAGATCATCATCGGATAATTATGGAGGCCGAAACAACATTAGAAATCTTGGGGAAGATCAATATTACAGTGATGACATGGAAAGCTTGGACCATTTGTTTGCTTCAAATCTGACAGATACAACTTCTTCTTCTGCTGCTTTCTTTGCACACTCCGACTTTCCCATGAACATGATGATACCACATAACAACGAACTAGTAATACCTCATCACAATCAAGCAAGCCAAGCCCTAGGAATCTGCTTTCCTGATTCATAG 810 0.4099 MTSPHQFSERSSMADMDQSCVPPGFRFYPTEEELVGYYLKRKINSLKINLDAIVELDLYKMEPWDIQDRCKLGYEEQNEWLLKKSEILNSLVMQEEGWVVCRAFKKPSPSHHVRARFEAQCYFRDHMSGHGGRPFSEILNQTHHFLNNSNSHHQGTSLSPLVNLDQQQQQQLVDLPQLDSPSLGIRSSSDNYGGRNNIRNLGEDQYYSDDMESLDHLFASNLTDTTSSSAAFFAHSDFPMNMMIPHNNELVIPHHNQASQALGICFPDS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2461 269 Gene3D NAC domain 30 83 IPR036093 GO:0003677|GO:0006355
Lele08g2461 269 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 81 - -
Lele08g2461 269 ProSiteProfiles NAC domain profile. 21 164 IPR003441 GO:0003677|GO:0006355
Lele08g2461 269 SUPERFAMILY NAC domain 12 105 IPR036093 GO:0003677|GO:0006355
Lele08g2461 269 Pfam No apical meristem (NAM) protein 22 80 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2461 Lele-ChrLele08 30323366 30329369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2461 13 82 NAC Transcription Factor Family AT1G71930 77.143 1.80e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele08g2461 NAM 5.4e-13 No_clan