Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2452 ATGGAAGATCCAGAGGAAGAAGAGCTTCTGAATCTCAGCCTCTCAGTTTCTGCAGGTAGAGAGAGGAAAAAGAAAGGAAAGATGTCGATGATGGTGAGTACCAGAGATCATCATCATGTTCATCATCTTCACAACAACAATTCCTTCTGCAACTCCTACGAACAAGCTGGCTTCGAAGGGAAGATCTTCAGGCTTCTTCAAACCAGAGATCAAATGCTTCGTCAAGATCTCAACCTCATGATGAAAAATCGAAGAGGAGTTTTAGAAGATGGCAATGGCCTCCCTCTAATTCATCTTCTTCTCAGTACAGCCACTTGTGTTGACGACAATAACATTAACTCTGCCCTAGACAACCTCACTCAGCTTTACCAAACCGTCTCTCTCACCGGCGACTCCGTCCAACGCGTCGTCGCTTACTTCGCCGACGGCCTCGCCGCCCGCCTCCTCACCCGAAAATCCCCTTTCTACGACATGCTCATGGAAGAACCCACAAGTGAAGAAGAGTTCTTAGCTTTCACAGACCTTTATCGAGTTTCCCCTTACTACCAATTCGCTCACTTCACAGCCAACCAAGCAATCCTCGAAGCCTTCGAAAACGAGGAAGACAAGAACAACCGAGCATTACATGTCATAGACTTCGATGTCTCCTATGGTTTTCAATGGCCTTCTCTGATACAATCTCTGTCGGAGAAAGCCACCAGCGGCAACAGAATATCCCTGAGAATCACAGGCTTCGGGAAGAACCTCAAAGAGCTTCAAGAAACAGAATCTCGTTTGATCAGCTTCTCAAAGGGATTCACCAATCTGGTGTTTGAATTCCAAGGTTTACTTCGTGGGTCACGAGTGATTAACCTAAGGAAGAAAAAGAATGAAACAGTGGGTGTTAATTTAGTGTCTTATTTGAACACATTGAGTAGTTTCATGAAGATTTCTGACACATTGGGATTTGTTCATTCGCTTAATCCCTCCATTGTTGTTCTTGTGGAGCAAGAAGGAAGTAGAAGCCCCAGAACGTTCTTGTCGAGATTCACTGATTCTTTGCACTATTTCGCCGCCATGTTTGATTCTTTGGACGATTGCTTACCGATGGAGAGCACAGAGAGGTTGAGGATCGAGAAGAAGCTTCTCGGGAAAGAGATCAAAGCGATGTTGAATTACTACGACGTGGACAGCGTGGATTGTCCCAAGTACGAGAGGATGGAGACATGGAAGGCGAGGATGGAGAGCCATGGATTCACAGGAACAAAAGTGAGTTCAAAAGCTTTGATTCAAGCGAAGCTACTTCTGAAGATGAGGACGCATTATTCTCCACTTCAGTTTGAAGACGACGGCGGAGGAGGTGGCGGCGGTGGTTTCAGGGTTTCAGAGAGAGACGAAGGTAGAGCGATATCTTTGGGATGGCAAAATAGGTTTCTTCTTACAGTCTCGGCATGGCAGACAGTAGTGTGA 1449 0.4596 MEDPEEEELLNLSLSVSAGRERKKKGKMSMMVSTRDHHHVHHLHNNNSFCNSYEQAGFEGKIFRLLQTRDQMLRQDLNLMMKNRRGVLEDGNGLPLIHLLLSTATCVDDNNINSALDNLTQLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFENEEDKNNRALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKNLKELQETESRLISFSKGFTNLVFEFQGLLRGSRVINLRKKKNETVGVNLVSYLNTLSSFMKISDTLGFVHSLNPSIVVLVEQEGSRSPRTFLSRFTDSLHYFAAMFDSLDDCLPMESTERLRIEKKLLGKEIKAMLNYYDVDSVDCPKYERMETWKARMESHGFTGTKVSSKALIQAKLLLKMRTHYSPLQFEDDGGGGGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQTVV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2452 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 81 474 IPR005202 -
Lele08g2452 482 ProSiteProfiles GRAS family profile. 87 479 IPR005202 -
Lele08g2452 482 Pfam GRAS domain family 96 479 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2452 Lele-ChrLele08 30247192 30248640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2452 84 479 GRAS Transcription Factor Family AT1G14920 33.659 6.23e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele08g2452 GRAS 6.8e-91 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2537 05 41139231 41140679 Lele08g2452 08 30247192 30248640 hybridization
Lele06g2516 06 32950288 32951309 Lele08g2452 08 30247192 30248640 hybridization