Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2450 ATGCAGGCAAAAGTTTCCTCTAATCCACTATCTTTTCCAGATTTCAATTTGCAGCATAGTAGTCTACAGAGGTGGGAAGATTCCTCTATGTCAGATTTCGGTGTAAGGATGGAAGCCCTGTTTAAAGAATTCAACCAAGCTTGTGGAGCCCAGTCCTTGCTTCCGGGTGGTTCCAACAACAAGATCAAGATCCCGAATCAAGGAAATTGTCAGATGGACGATGCATCACGAACCGGTAAACTCCAAGATTGGGATCCCACCATAATGTTGGAAAATCTTTCTTTCCTGGAGGATAAGATTCATCATCTCCAGGGTCTAGTTCATTTGATTGTTGATCAGAAAGGTCAACAATTCGGACGACCCCCCGATGAAATTATAACTCAAGAGAAGCAGCTTGTCACGGCCGATCTGACATCGATTATCGCTCAATTGATCTCTACAGCAGGAAGTCTTCTTCCTTCTGTCAGGCTTACTACTTCAAACACCAGTCCATCCATCAGACAACATAGCCAAAGTACTGGGATTACTTTTCCTTCTGGATTAAGTCTGAGTGGTAATATCCAACCACAACATGATATCATAGATAAAATACCTAATCAATCCAACCCGATTGATTTTACTAATAATATGTGTGAAATGGAGCAAAACCACATGGAAGAACATGAATCAAAAGATGAAGAGGATGTGGATGAGGGCGAGAACCTTCCACCGGGTTCCTTTGAGATTTTACAGCTAGAAAAAGAAGAAATCCTTGCTCCTCATACACACTTCTGTACAATATGTGGGAAGGGATTCAAGAGAGATGCGAATCTTCGGATGCATATGAGAGGACATGGCGATGAGTACAAAACCCCGGAAGCGCTTGCAAAACCTAACAAAGAATCCGTGTCCGAACCGAAGCTCATCAAGAGATATTCCTGTCCCTACCCTGGCTGCAAGCGTAATAAGGATCACAAGAGGTTTCAACCTCTGAAGACTATCTTATGTGTGAAAAACCATTACAAAAGAAGTCACTGCGACAAGAGTTACCTTTGCAACAGGTGTCACACGAAGAAATTTTCGGTCATGGCAGACCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTGTTTCAAGGCCATACACCAGCAATACCCTCGGATGAATCGAAAGCACCAGCCGGGCTAACTGATATGGAAATCAGGGAGAACAACAACAACAACAATAATAATAATAATAAGGGAGGAAGCATTAACTTGAGCTTTGGATCAAATGCTTCTTGTTGTGAAAATGGAATTCAAAACATTATGGATATGAAAGGTATTACTGATGATCCTATCAGTTACCTCTCATCATGGAACTTTGAAACCTGTAACTTTGGTGAATTCAATGATTTTCCTCGACCCCCATTTGAAGACGTCGCCGAAGGTTCGTTTCCTTTTCTCATGTCCGAATCCTTCAATTATTCTCCTAAATCTGGGTAA 1527 0.4158 MQAKVSSNPLSFPDFNLQHSSLQRWEDSSMSDFGVRMEALFKEFNQACGAQSLLPGGSNNKIKIPNQGNCQMDDASRTGKLQDWDPTIMLENLSFLEDKIHHLQGLVHLIVDQKGQQFGRPPDEIITQEKQLVTADLTSIIAQLISTAGSLLPSVRLTTSNTSPSIRQHSQSTGITFPSGLSLSGNIQPQHDIIDKIPNQSNPIDFTNNMCEMEQNHMEEHESKDEEDVDEGENLPPGSFEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESVSEPKLIKRYSCPYPGCKRNKDHKRFQPLKTILCVKNHYKRSHCDKSYLCNRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPSDESKAPAGLTDMEIRENNNNNNNNNNKGGSINLSFGSNASCCENGIQNIMDMKGITDDPISYLSSWNFETCNFGEFNDFPRPPFEDVAEGSFPFLMSESFNYSPKSG 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2450 508 Gene3D Classic Zinc Finger 239 309 - -
Lele08g2450 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 283 IPR013087 -
Lele08g2450 508 ProSitePatterns Zinc finger C2H2 type domain signature. 258 278 IPR013087 -
Lele08g2450 508 SMART c2h2final6 343 365 IPR013087 -
Lele08g2450 508 SMART c2h2final6 305 338 IPR013087 -
Lele08g2450 508 SMART c2h2final6 256 278 IPR013087 -
Lele08g2450 508 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 75 430 IPR044300 GO:0010044|GO:0010447
Lele08g2450 508 SUPERFAMILY beta-beta-alpha zinc fingers 255 280 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2450 Lele-ChrLele08 30232386 30233912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2450 224 506 C2H2 Transcription Factor Family AT1G34370 68.750 4.77e-136 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g2450 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g2450 08 30232386 30233912 Lele08g2450 08 30232386 30233912 ECH
Lele05g2534 05 41109121 41110647 Lele08g2450 08 30232386 30233912 hybridization
Lele06g2514 06 32935415 32936932 Lele08g2450 08 30232386 30233912 hybridization