Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2444 ATGGCTGCTTCTTCATCCGGAAATTCCATTTCTACCACTTCTTCATCTACATTCTCTCACAAACCGTTGGAATTCTCCCCCGATTCCCCCCAGAGAATCTCCCTCAGCCCCGATCAGGTCAAGTACTGCTCCGAAGCGCTAACCATCCTCAGGGAGAAGCTTCAGACGCCGTACAGGATCGGTCAAGAGTTTGCTCACTTGCAGGCCAATAGGATAACACCCAGTGAGATGAGGAGAAGATGCACTGTAGGTCTAAATGACGTAAATACCTCTTCCTCTGGAAGTGTTTCTCAGTTTATAGCTACACAAGGTCCACTACCACATACTTATGAGGATTTCTGGGAAATGGTGGTCCAATACCGTTGCCCTGCTGTTGTGATGCTCACTAGGCTTGTTGACAATTATAAGATGGTAAAATGTGGAGATTATTTTCAAGCTGAAGATGGATCTAGAGAGTTAGGTAATATCTCTATTATTGGCAAATGGATGAAAACTACTGAAACATCACTGGCACTGCGCCATTTGGAGGTTAAGCATAGAGAGGAAGAAGAGCCACCCTTGTCTGTTTTGCATATTCAGTATCCTGAATGGCCTGATCATGGAGTTCCCAAAGATACGTATGCTGTGCGTCAAATTTTGAAAAGATTGTACCGTGTGCCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGCAGGACTGGAACATACTGTGCAATTCACAACACAATTCAGAGAATCCTTGCTGGCGATATGTCTGCCTTGGATCTTGGTAATACCATAGTTGTCTTCAGGTCACAGCGTATTGGAATGGTCCAGACACAGGACCAGTACTTTTTCTGCTATAAAGCTATCGTAGAGGAACTGGAAGACCTTGTTTCCCATCAGCAATGA 903 0.4518 MAASSSGNSISTTSSSTFSHKPLEFSPDSPQRISLSPDQVKYCSEALTILREKLQTPYRIGQEFAHLQANRITPSEMRRRCTVGLNDVNTSSSGSVSQFIATQGPLPHTYEDFWEMVVQYRCPAVVMLTRLVDNYKMVKCGDYFQAEDGSRELGNISIIGKWMKTTETSLALRHLEVKHREEEEPPLSVLHIQYPEWPDHGVPKDTYAVRQILKRLYRVPPNLGPIVVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLGNTIVVFRSQRIGMVQTQDQYFFCYKAIVEELEDLVSHQQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2444 300 SMART PTPc_3 59 293 IPR000242 GO:0004725|GO:0006470
Lele08g2444 300 ProSiteProfiles PTP type protein phosphatase domain profile. 57 291 IPR000242 GO:0004725|GO:0006470
Lele08g2444 300 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 48 293 IPR029021 -
Lele08g2444 300 Pfam Protein-tyrosine phosphatase 96 290 IPR000242 GO:0004725|GO:0006470
Lele08g2444 300 MobiDBLite consensus disorder prediction 1 32 - -
Lele08g2444 300 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 95 294 - -
Lele08g2444 300 SMART ptp_7 188 290 IPR003595 -
Lele08g2444 300 PRINTS Protein tyrosine phosphatase signature 187 204 IPR000242 GO:0004725|GO:0006470
Lele08g2444 300 PRINTS Protein tyrosine phosphatase signature 258 273 IPR000242 GO:0004725|GO:0006470
Lele08g2444 300 PRINTS Protein tyrosine phosphatase signature 274 284 IPR000242 GO:0004725|GO:0006470
Lele08g2444 300 PRINTS Protein tyrosine phosphatase signature 225 243 IPR000242 GO:0004725|GO:0006470
Lele08g2444 300 PRINTS Protein tyrosine phosphatase signature 99 119 IPR000242 GO:0004725|GO:0006470
Lele08g2444 300 ProSitePatterns Tyrosine specific protein phosphatases active site. 228 238 IPR016130 GO:0016311|GO:0016791
Lele08g2444 300 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 207 282 IPR000387 GO:0016311|GO:0016791
Lele08g2444 300 CDD PTPc_plant_PTP1 88 285 - -
Lele08g2444 300 Gene3D Protein tyrosine phosphatase superfamily 38 294 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2444 Lele-ChrLele08 30135962 30140753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2444 38 297 Protein tyrosine phosphatase (PTP) family AT1G71860 63.300 7.51e-140 396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g2444 08 30135962 30140753 Lele08g2444 08 30135962 30140753 ECH
Lele05g2527 05 41012895 41021808 Lele08g2444 08 30135962 30140753 hybridization
Lele06g2507 06 32847239 32852027 Lele08g2444 08 30135962 30140753 hybridization