Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2380 ATGGGTCGGAGAAAATTAGCTCTGAAGACCCTCCAGAATAGGAATGCTCGCATGGCTCTGTTTGAGAGGAGGAAGAAGGGTTTATTCAAGAAAGCTTCTGAACTTTCCACACTCTGTGGAATCGATGCCTGTGTCATCATCTTCCCTCCTCCAGATTCTGAAAACCCTAATAAAGCTGAGACCTTTCCGCAAGATCCCACTCAGGTGATTCGGAATATTCAACAGTATGACGCCAAGAAGAAGAAAAGCCCTGAGAAACAGAGGAAGAACTACGATCTCTGTGAGTTCTTCAATGATAAGAAGAAGCAGGTTGAAGCTGAGACTTGCAGAGTCCTTGAACAGAGATTGAAGATGACATTTCCAAATCCAACCTCGGACGACAGCTTCGACAACCTGGGAGAGGATCAACTGAGGATGTTCATTGCTGAGCTGGATTCTAAGATTCAAGAGTGCGATCAAACGATTGGGTTGCTGAATGCAAAGAAATCACTCCAATCAGAGAATCCTCTGGTTTCAATGGATCATGATCATTGTTTGGTAATTCCTCCTCATGATGTTTCAGATGAAACCCACCTGGATCTGGGTTTAGAGAATCTTGATTTGGACATGTTTTTGGGCTTAGAATGGGATCAGTTTGATCCCATTATAGTTTAG 654 0.4343 MGRRKLALKTLQNRNARMALFERRKKGLFKKASELSTLCGIDACVIIFPPPDSENPNKAETFPQDPTQVIRNIQQYDAKKKKSPEKQRKNYDLCEFFNDKKKQVEAETCRVLEQRLKMTFPNPTSDDSFDNLGEDQLRMFIAELDSKIQECDQTIGLLNAKKSLQSENPLVSMDHDHCLVIPPHDVSDETHLDLGLENLDLDMFLGLEWDQFDPIIV 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2380 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
Lele08g2380 217 CDD MADS_SRF_like 2 53 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele08g2380 217 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Lele08g2380 217 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Lele08g2380 217 SMART madsneu2 1 65 IPR002100 GO:0003677|GO:0046983
Lele08g2380 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 50 IPR002100 GO:0003677|GO:0046983
Lele08g2380 217 SUPERFAMILY SRF-like 1 55 IPR036879 GO:0003677|GO:0046983
Lele08g2380 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele08g2380 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2380 Lele-ChrLele08 29478117 29478770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2380 1 150 Type I MADS-box Gene Family AT5G55690 28.947 1.49e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele08g2380 SRF-TF 9.2e-17 No_clan