Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2373 ATGGTGACCGCCGCCGACATGGGCGCATTGTTGCTCACCACGAACGCCGCGCTGAAGAAGGTTACCGGTGGGAAGGCGAGAGTCCTACCGGAGAGTTATAACGTGGAAGAGAAAGAAAGTAATGATATGGCCGAGCCGTCGCAGGTCGAAGAAGCCATTGTTGGAGAAGATAGCAGAAGAGCCTGTTTGTTCAAGATGAAGATGAAGAAGAAGAATCAAAGTTCTGTTTCTGAAGCCAGGCTGTTGGATTTGGGATTGTGTGTGGCGTGTTCCATGTCTCCCTCCAGCCACACCACACCCCTCTTCCGCCGTCTTTTCCCCCAATCCAAACTCATCCCCAAAACCCGCTTCTTGGTGGACGCATTTCGCCATGCCGGCGATTATTCTGTTTCCTACTTCCTTTCCCATTTCCACTTTGATCACTACACTGGTCTTCGCTCTAATTGGTCTAAAGGCATTTTTTATTGCTCAAACACCACTGCTCGACTTGTTGTTGAAGTGCTCAGGATTCCTTCGAAGTTCGTAGTCCCTTTACATCTCTGTGAGCCGGTTGAGATTGATGGCTGTGAAGTTACTCTTATTGATGCGAATCATTGCCCAGGGGCCGTGCAATTCTTGTTCAAAATTCCGAGTCTTGATGGAAAGTGCGAGAGTCTTGTTCACACGGGAGATTTTCGGTTTCTAAGGCAACGAAGTCAGAGCCTTTACTTGCTGCTTATAAGATTCTGCTTGAACTTGCTTGGAGATGAAACAACATCAATATTTCCAGATTTGATTGACTTAATCAAGGAATTCTGCAAGCCTGCTTCAGTGACTTTTATACTGGATGCTGAAATTGTGGGTATTGATAGGAAGAATGGATATAGGTATATGGCTTTGCAAGAGTTATCTTCACGTGGGAGAGGAAGTAAAGATGCCTCAGTTACTACAAAGAGCATAAAGCTCAGACTTCTTAAATTGCCAGAAACACAGATAACTGATCTCAAGAATGCTAGAAATGCTCATGAAGCATATAGACCAATGCTTCCATTAATTGGCTATCTGAAGGATTTGTTCTATGACAAGAAACTTGGTTATTTTGAATATGCAAAGGAAACAACTATTGAAGCAGATGATGCTTCATTAACCTGTGAAGACACAGTAAATAAGATAAACTCTTTCCTAGAAGGCGCAATCCATTCATCATGTGAAGGAATTATGGTGAAATCGTTGGATGTTGATGCGGGATATTCTCCATCAAAGCGTACAGTCACATGGTTAAAGGTGAAGCGAGATTATGTGGATGGTTTAAATGATTCTCTTGATTTAGTACCAATTGGAGGTTGGTATGGAAATGGAAGGAAGGCTGGATGGTATAGCCCATTTTTCATGGCATGTTACAATCCCGAAACAGAGGAGTACCAAAGCGTATGCCGTGTGACGTCTGGGTTCTCAGATGCCTTCTATGTAGAGGTAAAAAAGATGAAAGAATTCCTTTCTGAGGACAAAATATTGTCCAAAAAGTTGCCATATTACCGAACAGCCAAGGTACGGGACAAGTGGTTCAGTCCGCTACTTGTTTGGGAAATAAGAGGTGCTGAATTTACAATAGCTCCAGTCCACCAAGCTGCCATTGGTCTGGTTCATCCGTCTCGTGGCATCTCAATCAGATTCCCCAGATTTGTTTGCAATGTGTTGGACAGGAACCCAGAAGAAAGCAGCACAGCTGTTGATATAGCTGAAATGTTTCATTCTCAGACCCGGAAGATGGATGTTGCAGCTGAAGATTGA 1770 0.4373 MVTAADMGALLLTTNAALKKVTGGKARVLPESYNVEEKESNDMAEPSQVEEAIVGEDSRRACLFKMKMKKKNQSSVSEARLLDLGLCVACSMSPSSHTTPLFRRLFPQSKLIPKTRFLVDAFRHAGDYSVSYFLSHFHFDHYTGLRSNWSKGIFYCSNTTARLVVEVLRIPSKFVVPLHLCEPVEIDGCEVTLIDANHCPGAVQFLFKIPSLDGKCESLVHTGDFRFLRQRSQSLYLLLIRFCLNLLGDETTSIFPDLIDLIKEFCKPASVTFILDAEIVGIDRKNGYRYMALQELSSRGRGSKDASVTTKSIKLRLLKLPETQITDLKNARNAHEAYRPMLPLIGYLKDLFYDKKLGYFEYAKETTIEADDASLTCEDTVNKINSFLEGAIHSSCEGIMVKSLDVDAGYSPSKRTVTWLKVKRDYVDGLNDSLDLVPIGGWYGNGRKAGWYSPFFMACYNPETEEYQSVCRVTSGFSDAFYVEVKKMKEFLSEDKILSKKLPYYRTAKVRDKWFSPLLVWEIRGAEFTIAPVHQAAIGLVHPSRGISIRFPRFVCNVLDRNPEESSTAVDIAEMFHSQTRKMDVAAED 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2373 589 Pfam ATP dependent DNA ligase domain 250 423 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele08g2373 589 ProSiteProfiles ATP-dependent DNA ligase family profile. 379 461 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele08g2373 589 FunFam DNA ligase 428 588 - -
Lele08g2373 589 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 248 428 - -
Lele08g2373 589 CDD SNM1A-1C-like_MBL-fold 94 227 - -
Lele08g2373 589 SUPERFAMILY Nucleic acid-binding proteins 432 579 IPR012340 -
Lele08g2373 589 Gene3D DNA ligase/mRNA capping enzyme 251 320 - -
Lele08g2373 589 SUPERFAMILY Metallo-hydrolase/oxidoreductase 117 227 IPR036866 -
Lele08g2373 589 CDD OBF_DNA_ligase_I 432 578 - -
Lele08g2373 589 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 249 581 - -
Lele08g2373 589 Pfam ATP dependent DNA ligase C terminal region 449 555 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lele08g2373 589 Gene3D - 354 428 - -
Lele08g2373 589 Gene3D - 429 588 IPR012340 -
Lele08g2373 589 Gene3D - 112 233 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2373 Lele-ChrLele08 29397661 29404408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2373 214 579 Core DNA Replication Machinery Family AT1G08130 31.989 1.64e-62 218