Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2307 ATGGAAGAAGATCAGCTTCAACAGCAACCACGAGCTTTCTACGGAAAGGAAACTGAAACTTCGGGCTTAGGAAATTTTTTTTCCCTAGGTTATACGGATTCTCGTCTTGAATCCACAGCATTTCCAATTCAAGGTATGGAGTCTGTGGTGGCAACAGTGAGTGGCTATCACGGAACAGAGCGATTCAACCTTATCAAGTTGATTTCACATGCTGGTGCAAATTATGTTGGCGCAATGTCTCAATCGATCACGCACCTGATTTGTTGGCGATTTGAAGGAAAGAAATATGATCTTGCTAGGAAGTTCAGAACAGTTATAATAAATCACAAGTGGATTGAAGACTGTTTAAAGCAAGGAAGGCGTGTTCCAGAGGAACCTTATAGATTGAAAAGTGGAGAAGAGGTGGGGCCAATATTGCTGCAAGTTCCACTTATTGTTCGGGCGAGTAGCTTGGCTAAGAATAAAGTGATTAAATATGGATCATATGACATTGTCTCCAAAAGTCAAACAACTGACATCAGTTCTGGAGCTCCAGGAAATTCTGTCAAGGAAGATTCCTATTTAACGAATGGGGAGGAGCCAATAACTTTTTCTTGCAGACGGTCAAGGACAGAAAAAAGGAAGATCTCCAATAGTAATGGGGTGGTTACTTATGCTGGTCCTTCTCGTCGCAGAAGAAGGCTTGTGAAAAGGAATGCTCAAGAAGTTTCAGCTCCTTTACTTGATTTAAATTCTGAGGAGTATCTTAGCAGAATGGATAGATTAAATACTGATGCTGTAGCTTCCACTAGCCTTTCTGGTGGTGTCTCTACTGATATTATTTTAGAAAATAGAGAAGGATCAGATACTGACTCATATAATCAAAGCATAGCAATCAATGCAGCATCAAATTCCACTGGACAAATCAATGATTCAAATAATTTATCAAGTTCAAGAATTTCAACTTTATGCGTACAAGATGCCTCGCCTACTGCAGAGCAAATCTCAGTAGACGAGTGTTCTGAAAAGTCCGCAGATGATATTCAGGATGGTCATGTGGCTGACTTGCCTACGTCGACAGACTTGTCATGTGTCATATGTTTGATGGAATTCAGCTCAACGCGGGGGGTTTTGCCATGTGGACATAGGTTTTGTTATTCTTGTATCCAGAGTTGGGTCGATCACAGGACTACAATGGGAAAAATCTCAACGTGTCCTTTGTGCAAGTTAAGGTTTGAAAGCATCATTAAATATGAGGATTTGGCCGTGGATCAAAAGATATATTCCCAAACAATCCCATGTGGCATTCCAATCTCAGATATTATTTTACTTATGGATCGAGCACAACCAAATTATGGTTTTGAGTCCTCACAGACAGGTGCTTGTGTTGTTTGCCGGGGGCGAGAACCTGAGGATCTGCTCATGAGTTGCCATCTTTGCCATATTCGACAAATCCATTCCTATTGCTTGGATCCTCCTTTATTGCCATGGACATGCAATCACTGTAAGGATCTTCAGATGCTTTATCATAATCATTCACATTAG 1524 0.4088 MEEDQLQQQPRAFYGKETETSGLGNFFSLGYTDSRLESTAFPIQGMESVVATVSGYHGTERFNLIKLISHAGANYVGAMSQSITHLICWRFEGKKYDLARKFRTVIINHKWIEDCLKQGRRVPEEPYRLKSGEEVGPILLQVPLIVRASSLAKNKVIKYGSYDIVSKSQTTDISSGAPGNSVKEDSYLTNGEEPITFSCRRSRTEKRKISNSNGVVTYAGPSRRRRRLVKRNAQEVSAPLLDLNSEEYLSRMDRLNTDAVASTSLSGGVSTDIILENREGSDTDSYNQSIAINAASNSTGQINDSNNLSSSRISTLCVQDASPTAEQISVDECSEKSADDIQDGHVADLPTSTDLSCVICLMEFSSTRGVLPCGHRFCYSCIQSWVDHRTTMGKISTCPLCKLRFESIIKYEDLAVDQKIYSQTIPCGIPISDIILLMDRAQPNYGFESSQTGACVVCRGREPEDLLMSCHLCHIRQIHSYCLDPPLLPWTCNHCKDLQMLYHNHSH 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2307 507 ProSiteProfiles BRCT domain profile. 38 129 IPR001357 -
Lele08g2307 507 SUPERFAMILY BRCT domain 43 130 IPR036420 -
Lele08g2307 507 PANTHER F5A8.9 PROTEIN 181 504 - -
Lele08g2307 507 Gene3D BRCT domain 43 134 IPR036420 -
Lele08g2307 507 SMART ring_2 357 401 IPR001841 -
Lele08g2307 507 SUPERFAMILY RING/U-box 348 408 - -
Lele08g2307 507 Pfam Ring finger domain 356 402 IPR001841 -
Lele08g2307 507 ProSitePatterns Zinc finger RING-type signature. 373 382 IPR017907 -
Lele08g2307 507 ProSiteProfiles Zinc finger RING-type profile. 357 402 IPR001841 -
Lele08g2307 507 Pfam twin BRCT domain 49 111 IPR001357 -
Lele08g2307 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 420 IPR013083 -
Lele08g2307 507 SUPERFAMILY FYVE/PHD zinc finger 445 497 IPR011011 -
Lele08g2307 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 506 IPR013083 -
Lele08g2307 507 SMART BRCT_7 43 119 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2307 Lele-ChrLele08 28746136 28750559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2307 79 135 Core DNA Replication Machinery Family AT4G02110 44.828 1.08e-11 65.9