Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2271 ATGAAGGATAGAGTTACTCAGATTGAGGCTAGCGATGCTCCAAGCACCACTACGCAAAGGAAGGGCAGAAGTGCGACTCGTTTGAAAGATATTACGAAGGACAGGATGGAGGGGAAACTGCTTCCGATAGAGTTTGACAGAAACTGGAACCCAACTGGTGAACACAGGACAAAGTACTTGAGGAAGAGGCAGAAGCTGGCAGGCACAATGGGTTCTGTTTGTGGTTGTTTGAGTGTTGAGAATCTTGAAGATTATGTAAATCCAAATAGTTCTGTATATAGAAATTGCATGTGCTTCAGTTGCTTCGTACATAACTTTTTGAATGTGTATACAACAATATTTCGTAGGCGCGAAGTGCATTCCATTTCTTCATCTATCCAGGGGGCAGCATCTATGACTTCTACAGCATCACTGGATAATTCCTTATCAGACATGTACCGTGCTCCTCCCCGGCCCTTGCCATATGATGCAGACCCCAGGTATTTTCTCTCACAACGTGATGGACTAGTTTCAAGACGTGAGAAGGGTTCAAGTCATTCAAATGAGGAATCGCAACCTCTAAGAAGTGATCTAGATGTGGATTCAGAATCTTTGAATATGGGAGACAAATGGAATGAGTGTGCCTGTGAAAATGGATCAAAGGAGTACCTTTCTAAGTCCTCACTAAGACTTTCATCAGCAAAATATACAACTGGAACTGGGGTGGTGTATGCATCATTAGAAGATGAGGATGTTTGTCCTACATGTCTTGAAGAATATACCCGAGAGAATCCAAAGATAATGACAAAATGCTCTCACCATTTTCATCTTGGTTGCATCTATGAGTGGATGGAGAGAAGTGAAAACTGTCCAGTGTGTGGGAAGGAGATGGAATTTGATGAAACGCCATAA 891 0.4254 MKDRVTQIEASDAPSTTTQRKGRSATRLKDITKDRMEGKLLPIEFDRNWNPTGEHRTKYLRKRQKLAGTMGSVCGCLSVENLEDYVNPNSSVYRNCMCFSCFVHNFLNVYTTIFRRREVHSISSSIQGAASMTSTASLDNSLSDMYRAPPRPLPYDADPRYFLSQRDGLVSRREKGSSHSNEESQPLRSDLDVDSESLNMGDKWNECACENGSKEYLSKSSLRLSSAKYTTGTGVVYASLEDEDVCPTCLEEYTRENPKIMTKCSHHFHLGCIYEWMERSENCPVCGKEMEFDETP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2271 296 SUPERFAMILY RING/U-box 240 292 - -
Lele08g2271 296 MobiDBLite consensus disorder prediction 172 195 - -
Lele08g2271 296 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 123 294 - -
Lele08g2271 296 SMART ring_2 246 286 IPR001841 -
Lele08g2271 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 294 IPR013083 -
Lele08g2271 296 Pfam RING-H2 zinc finger domain 243 286 IPR024766 GO:0008270
Lele08g2271 296 ProSiteProfiles Zinc finger RING-type profile. 246 286 IPR001841 -
Lele08g2271 296 MobiDBLite consensus disorder prediction 1 26 - -
Lele08g2271 296 FunFam E3 ubiquitin-protein ligase At3g02290-like 223 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2271 Lele-ChrLele08 28296384 28306379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2271 70 296 C3H Transcription Factor Family AT5G15790 60.345 6.09e-94 276