Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2202 ATGGCCACCTCCCAGCATCGCTGCGTTTTTGTTGGGAACATACCGTATGATGCCACAGAGGAACAGCTTGTTGAAATCTGCCAGGAGGTTGGGCCTGTAGTATCATTCAGATTAGTCATCGATAGAGAAACTGGAAAGCCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTCTGAGTGCCCGTCGTAACCTTCAGGGTTATGAGATTAATGGGCGGCAGTTGCGTGTTGATTTTGCTGAAAATGACAAAGGTGCTGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGATTGGCAGCAAATGTTGACCCTCAGAAACAAGTAGCCGGACCAGTTGTTCATGGGGAAGCTGCCCCCCACCAACCTATTGGTCTTCATATTGCTATAACAGCTGCAACAGTCATGGCAGCAGCTCTAGGAGGGCCTCAATCTGGCATCCAGTCAAATCAAAATGGTTTGCAGGTTCAGTCAGGATTGGCACATGACCCTTTAACTCTGCATCTGGCCAGACTATCTAGGAATCAGCTGACTGAGATTATCTCTGACCTCAAGGCAATGGCTACACATAACAAGGAATTAGCTCGTCAGTTGTTACTTTCTAGACCTCAGTTGCCTAAGGCTCTTTTTCAGGAGGTTGACCCAAATTGTCATGCTGAAATTGAGAAAGAAACAGCGGACTAG 693 0.4719 MATSQHRCVFVGNIPYDATEEQLVEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLAANVDPQKQVAGPVVHGEAAPHQPIGLHIAITAATVMAAALGGPQSGIQSNQNGLQVQSGLAHDPLTLHLARLSRNQLTEIISDLKAMATHNKELARQLLLSRPQLPKALFQEVDPNCHAEIEKETAD 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2202 230 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lele08g2202 230 FunFam Cleavage stimulating factor 64 1 116 - -
Lele08g2202 230 Gene3D - 153 219 - -
Lele08g2202 230 CDD RRM_CSTF2_CSTF2T 9 83 - -
Lele08g2202 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lele08g2202 230 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 215 - -
Lele08g2202 230 MobiDBLite consensus disorder prediction 84 108 - -
Lele08g2202 230 Gene3D - 1 111 IPR012677 -
Lele08g2202 230 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Lele08g2202 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Lele08g2202 230 Pfam Hinge domain of cleavage stimulation factor subunit 2 162 214 IPR025742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2202 Lele-ChrLele08 27372340 27374701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2202 8 82 Eukaryotic Initiation Factors Gene Family AT2G23350 30.667 8.58e-08 50.4