Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2178 ATGGGAAATATTGTTCCTTCTAGTGTTACCCCATCTTTGTTATTTTCTCTGTTCTTCTTCTGGCTGATCATGGCAAAGATTGAACAAGTCTCCTCTCTCTCACCTGATGGACAAGCCCTTCTTTCCCTTATATCTTCTGCTGATCCTTTTGCAAAGTCCTCCTCTTCTGTTCTCTCTTCATGGAACCCATCAAGCCAAACCCCTTGTTCCTGGCATGGCGTTACTTGCTCCCCACAAGAAAGAGTCATTTCATTATCTATTCCAAACACTTTCCTTAACCTTTCATCTCTTCCTTCCCAGCTTTCTTCTTTATCATATCTGCAACTTCTCAATCTGTCTTCCACTAATGTGTCTGGCTCCATCCCACCTTCTTTTGGCCAACTCTCCCATCTTCGCCTCCTTGATATCTCTTCAAATTCTCTTACCGGTTCCATTCCTGAAGAACTCGGGAAACTCTCTTCGCTGCAGTTCCTTTTCTTGAACTCCAATGGATTGACTGGAAGGATTCCTCAGCAACTGGCTAATCTTACTTCACTTCAAGTTTTCTGCCTGCAGGACAATCTCCTTAATGGGTCAATACCATCACAATTAGGCTCTTTAACATCTCTGCAAGAGTTTCGAATTGGGGGCAATCCGTATCTAAGTGGTTCAATTCCACCACAATTAGGACTACTCACCAACCTCACTACATTTGGGGCTGCAGCCACCGGTCTTTCAGGTGTTATTCCCTCTACATTCGGGAACTTGATCAATCTCCAAACTCTAGCACTTTATGATACAGAAATTTCTGGTTCTATACCACCGGAGCTTGGCTTGTGTTCTGAGCTAACGAATCTGTATTTGCACATGAATAAGCTGACAGGTTCTATCCCACCTCAACTGGGTAAGTTGCAAAAGCTTACTAGCTTGCTTCTTTGGGGCAATGCCTTATCTGGGTCAATCCCTGCTGAGATTTCCAATTGTTCATCACTTGTTGTGTTTGATGCCTCTGCTAATGAGCTTGTGGGTGAGATACCATATGATTTTGGAAAGCTGATGGTCCTAGAACAGCTTCATCTATCAGACAATTCTCTTACAGGGAAAATACCATGGCAACTGAGCAACTGCACTAATCTTGCTACCCTTCAGCTTGACAAGAATCAGTTATCAGGTACTATTCCATGGCAAGTTGGGAGATTGAAGTATTTGCAGAGTTTTTTCTTGTGGGGTAATTCAGTGTCTGGAACCATACCTGCCTCTTTTGGTAACTGTACAGAACTTTATGCACTTGACCTTTCAAGGAACAAGCTAACAGGTTCAATTCCAGATGAAATTTTCGGCTTGAAGAAGCTGAGTAAGCTTTTGGTTCTGGGAAATTCCTTATCTGGAGAATTACCACCAAGTGTTTCAAATTGTGAGTCTCTAGTGAGGTTGAGGCTTGGAGAAAATCAGCTTTCAGGACATATTCCTAGAGAGCTTGGCCAACTGCAGAATCTGGTGTTCCTTGACTTGTACATGAACCATTTCTCAGGAAGCTTGCCGGTAGAGATTGGGAACATCACAGTTCTTGAGCTTCTAGATGTTCATAATAATCACATTACTGGGGATATCCCATCTCAGCTTGGGGAGCTTGTAAATTTAGAGCAGCTAGATCTCAGTAGAAACAGTTTGAGAGGTCAAATTCCTTGGAGCTTTGGAAACTTAAGTTATTTGAACAAACTCATTCTCAACAATAATTTACTCACAGGGTCAATCCCAAAATCTATTAAAAATTTGCAGAAGCTGACCCTATTGGATTTGAGTTACAATAACTTCTCTGGGGACATCCCATCTGAGATTGGTTATGTTACAAGCTTAACCATCAGTCTGGACTTGAGCTCAAATGCATTTACAGGAGAAATACCCGAGTCAATGAGCGTTTTGACCCAGTTACAATCACTTGATCTTTCTCATAATTTGCTTCATGGAGGAATTAAGGTTCTTGGTTCCCTCACCAGTCTCACTTCCCTAAATATCTCCTACAACAACTTCTCAGGTCCTATCCCAGTAACTCCTTTCTTTAGAACCCTATCTTCAAATTCATATTATGAGAATCCCCATCTTTGTGAATCCCTCGATGGGACCACATGTTCTAGTCTGTTTCGACGAAATGGTCTAAAATCTGCCAAAACCATAGCTATGATATTGGTAATTCTCGCCTCAGTTACCATAGTTGTCATTGCATCTTGGATTTTGGTGACACGAAATCACAAGAATATGATGGAAACATCTTTGGGGACATCAGCATCTGCTTCAGGAGCTGAGGATTTCTCATATCCTTGGACTTTCATCCCATTTCAGAAACTAAACTTCACCATAGATAATATCTTGGATTGCTTGAAGATTGAGAATGTGATTGGAAAGGGTTGCTCTGGCGTTGTATACATGGCTGAAATGCCTAATGGGGAGTTGATAGCAGTAAAGAAGCTTTGGAAAGCAAGCAAAGACGAAACTCTGGACTCTTTTGCAGCAGAAATTCAGATTCTTGGGCACATCCGGCATAGGAACATTGTGAGGCTCCTAGGTTATTGTTCTAACAAAAGTGTTAAGCTTCTTCTCTATAATTACATTCCAAATGGTAACCTAAGACAGCTATTGCAAGGGAATAGGTACCTAGACTGGGAAACTAGGTACAAGATTGCAGTTGGATCAGCTCAGGGTCTAGCATACCTTCATCATGACTGTTTGCCAGCAATCCTTCACAGAGATGTTAAGTGCAATAACATACTTCTAGATTCAAAGTTTGAGGCATATTTGGCAGATTTTGGTCTTGCCAAGCTGATGAGTTCACCAAATTATCACCATGCAATGTCCAGAGTCGCTGGATCTTATGGTTATATTGCCCCAGAGTATGGCTACACCATGAACATAACGGAGAAGAGTGACGTCTACAGTTATGGGGTGGTTTTGCTGGAGATACTGAGCGGGAGAAATGCTGTTGAGTCCCATGTTGGGGATGGAGTACACATAGTTGAGTGGGTAAAGAGGAAGATGGGAAGCTTTGAACCAGCAGTGTCAATTCTAGACACAAAGCTCCAAGGCCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACTCTTGGGATTGCCATGTTCTGTGTGAACTCTTCGCCGGCCGAACGACCCACGATGAAGGAAGTGGTGGCTCTGTTATTGGAGGTGAAGAGCTCACCTGAGGAGGTGGGAAAGACCTCTCAGCCTCTAATAAAGCAGTCATCAAATCAAAGTTAA 3249 0.4241 MGNIVPSSVTPSLLFSLFFFWLIMAKIEQVSSLSPDGQALLSLISSADPFAKSSSSVLSSWNPSSQTPCSWHGVTCSPQERVISLSIPNTFLNLSSLPSQLSSLSYLQLLNLSSTNVSGSIPPSFGQLSHLRLLDISSNSLTGSIPEELGKLSSLQFLFLNSNGLTGRIPQQLANLTSLQVFCLQDNLLNGSIPSQLGSLTSLQEFRIGGNPYLSGSIPPQLGLLTNLTTFGAAATGLSGVIPSTFGNLINLQTLALYDTEISGSIPPELGLCSELTNLYLHMNKLTGSIPPQLGKLQKLTSLLLWGNALSGSIPAEISNCSSLVVFDASANELVGEIPYDFGKLMVLEQLHLSDNSLTGKIPWQLSNCTNLATLQLDKNQLSGTIPWQVGRLKYLQSFFLWGNSVSGTIPASFGNCTELYALDLSRNKLTGSIPDEIFGLKKLSKLLVLGNSLSGELPPSVSNCESLVRLRLGENQLSGHIPRELGQLQNLVFLDLYMNHFSGSLPVEIGNITVLELLDVHNNHITGDIPSQLGELVNLEQLDLSRNSLRGQIPWSFGNLSYLNKLILNNNLLTGSIPKSIKNLQKLTLLDLSYNNFSGDIPSEIGYVTSLTISLDLSSNAFTGEIPESMSVLTQLQSLDLSHNLLHGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFFRTLSSNSYYENPHLCESLDGTTCSSLFRRNGLKSAKTIAMILVILASVTIVVIASWILVTRNHKNMMETSLGTSASASGAEDFSYPWTFIPFQKLNFTIDNILDCLKIENVIGKGCSGVVYMAEMPNGELIAVKKLWKASKDETLDSFAAEIQILGHIRHRNIVRLLGYCSNKSVKLLLYNYIPNGNLRQLLQGNRYLDWETRYKIAVGSAQGLAYLHHDCLPAILHRDVKCNNILLDSKFEAYLADFGLAKLMSSPNYHHAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRNAVESHVGDGVHIVEWVKRKMGSFEPAVSILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLLEVKSSPEEVGKTSQPLIKQSSNQS 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2178 1082 ProSitePatterns Protein kinases ATP-binding region signature. 792 815 IPR017441 GO:0005524
Lele08g2178 1082 Gene3D Ribonuclease Inhibitor 584 695 IPR032675 -
Lele08g2178 1082 Pfam Leucine Rich Repeat 348 369 IPR001611 GO:0005515
Lele08g2178 1082 Pfam Leucine Rich Repeat 539 561 IPR001611 GO:0005515
Lele08g2178 1082 SMART serkin_6 786 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g2178 1082 SUPERFAMILY Protein kinase-like (PK-like) 769 1057 IPR011009 -
Lele08g2178 1082 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 443 512 - -
Lele08g2178 1082 ProSiteProfiles Protein kinase domain profile. 786 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g2178 1082 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 863 1075 - -
Lele08g2178 1082 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 212 435 - -
Lele08g2178 1082 Gene3D Phosphorylase Kinase; domain 1 770 862 - -
Lele08g2178 1082 PRINTS Leucine-rich repeat signature 420 433 - -
Lele08g2178 1082 PRINTS Leucine-rich repeat signature 634 647 - -
Lele08g2178 1082 SUPERFAMILY L domain-like 384 708 - -
Lele08g2178 1082 Pfam Leucine rich repeat 396 454 IPR001611 GO:0005515
Lele08g2178 1082 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Lele08g2178 1082 Pfam Protein kinase domain 788 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g2178 1082 Gene3D Ribonuclease Inhibitor 388 481 IPR032675 -
Lele08g2178 1082 Gene3D Ribonuclease Inhibitor 34 194 IPR032675 -
Lele08g2178 1082 Gene3D Ribonuclease Inhibitor 195 288 IPR032675 -
Lele08g2178 1082 Gene3D Ribonuclease Inhibitor 482 580 IPR032675 -
Lele08g2178 1082 Gene3D Ribonuclease Inhibitor 289 387 IPR032675 -
Lele08g2178 1082 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 513 706 - -
Lele08g2178 1082 Gene3D Transferase(Phosphotransferase) domain 1 863 1078 - -
Lele08g2178 1082 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 343 1057 - -
Lele08g2178 1082 SUPERFAMILY L domain-like 57 407 - -
Lele08g2178 1082 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Lele08g2178 1082 MobiDBLite consensus disorder prediction 1063 1082 - -
Lele08g2178 1082 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 33 211 - -
Lele08g2178 1082 MobiDBLite consensus disorder prediction 1065 1082 - -
Lele08g2178 1082 FunFam Putative LRR receptor-like serine/threonine-protein kinase 771 862 - -
Lele08g2178 1082 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672|GO:0006468
Lele08g2178 1082 SMART LRR_typ_2 634 661 IPR003591 -
Lele08g2178 1082 SMART LRR_typ_2 585 609 IPR003591 -
Lele08g2178 1082 SMART LRR_typ_2 249 273 IPR003591 -
Lele08g2178 1082 SMART LRR_typ_2 417 441 IPR003591 -
Lele08g2178 1082 SMART LRR_typ_2 537 560 IPR003591 -
Lele08g2178 1082 SMART LRR_typ_2 297 321 IPR003591 -
Lele08g2178 1082 SMART LRR_typ_2 465 489 IPR003591 -
Lele08g2178 1082 SMART LRR_typ_2 128 152 IPR003591 -
Lele08g2178 1082 SMART LRR_typ_2 176 200 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2178 Lele-ChrLele08 26910625 26914448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2178 32 1061 Receptor kinase-like Gene Family AT5G56040 45.533 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele08g2178 Pkinase 2.5e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2296 05 38018343 38022747 Lele08g2178 08 26910625 26914448 hybridization
Lele06g2213 06 28134092 28137907 Lele08g2178 08 26910625 26914448 hybridization