Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2171 ATGCCAATAGGAGTGGTCCACCAGCAACCATATCACATGTCACAAGCGATGCCAATGTCCCCTGAATTTCCATCATCATACCCTTTTCATGATCACTCAACTCCTCAAAACCACATTGTTTATTCAGTTACTCAAATACATCAATGTAACCCACAAAATTCCTCCGACGGTGATCAATATAACCCACAACCACATCATGAGCTACCGCGACCGACATTACCTGAGCTTTTGTCAGACCCTTGGCTCTTTGAAAGGAAACACTTGGTGAATCAGCCTTCTTCCTTTAACTCGGAGGCACCAATGAATATTCATACCAATATCAATAAGGAAAAGTCAAGGATGAAGGAAGAACACATATGGAGTGAAGAAGAACACAAGGGATTTTTTATTGGATTGCAAAAGTACGGGAGGGGAAATTGGAAGGAGATTTCCAAGTATGTTGGAAAAACAAGGAGAGCAATCCAAAATGGAAGTCATGCTCAAAAATCCTTTGAACACCGAAAGAAGACAGGGAATAAAAAGAGGAGAAGAAGAATCATCCACGATATAATCACTGATTCTTATGTTTCCTCTTAA 576 0.4028 MPIGVVHQQPYHMSQAMPMSPEFPSSYPFHDHSTPQNHIVYSVTQIHQCNPQNSSDGDQYNPQPHHELPRPTLPELLSDPWLFERKHLVNQPSSFNSEAPMNIHTNINKEKSRMKEEHIWSEEEHKGFFIGLQKYGRGNWKEISKYVGKTRRAIQNGSHAQKSFEHRKKTGNKKRRRRIIHDIITDSYVSS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2171 191 SUPERFAMILY Homeodomain-like 115 169 IPR009057 -
Lele08g2171 191 MobiDBLite consensus disorder prediction 49 72 - -
Lele08g2171 191 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 168 IPR017930 -
Lele08g2171 191 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 115 166 IPR006447 GO:0003677
Lele08g2171 191 CDD SANT 120 156 IPR001005 -
Lele08g2171 191 Gene3D - 120 169 - -
Lele08g2171 191 ProSiteProfiles Myb-like domain profile. 120 151 IPR001005 -
Lele08g2171 191 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 47 186 IPR043363 -
Lele08g2171 191 MobiDBLite consensus disorder prediction 154 175 - -
Lele08g2171 191 Pfam Myb-like DNA-binding domain 120 153 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2171 Lele-ChrLele08 26777200 26777879 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele08g2171 Myb_DNA-binding 2.6e-07 CL0123