Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2083 ATGTCCTTTCGCAGTATAGTTCGTGATGTAAGGGATGGGTTTGGGAGCTTATCAAGGCGGAATTTTGAGGTGAGGCTTCCAGGCCATCATAGGAAGTCACAGAGCTCAGTACATGAGTTACAAGATCCAGCTCCAGTTATACAGAACAGCTGTTGGGCTAGCCTTCCACCAGAGCTTCTTCGTGATGTTATCAAAAGATTGGAAACAAGCGAGAGTACATGGCCTGGTCGTAAACATGTAGTTGCCTGTGCTTCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCAGAGTTCTCTGGGAAGATTACTTTCCCTATTTCCCTAAAACAGCCTGGATTCAGGGATGGAACCATCCAGTGTTTCATCAAGAGGGACAAATCTAATTTGACATACCACCTTTTCCTTTGCCTTAGTCCTGCACTGCTTGTTGAAAATGGAAAGTTTCTTTTATCGGCAAAAAGAACAAGAAGAACTAAATGCACAGAGTATATTATAACAATGGATGCAGATAACATATCAAGATCTAGTAGTAGGTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAATTTATAATTTATGATACACAGCCTCCGTACAATAATTCTCAGCTGTCTCAACCTGGCCGAAGCCGTAGGTTTTATTCAAAAAAGGTTTCTCCAAAAGTCCCTAGTGGCAGCTACAATATTGCCCAAGTCTCTTATGAGCTTAATGTGCTAGGTACTAGGGGACCTCGACGGATGCACTGTACCATTTACTCAATCCCTGCAACATCTCTGGAGCCTGGTGGCATTGTTCCAGGCCAACCTGAGCTTCTTCCCCGTTCCCTTGAGGATTCATTCAGAAGTATATCCTTCTCAAAATCGATTGACAATTCAACTGAGTTTAGCAGCTCGAGGTTCTCAGACATAATTGGTGTTGGAAACGAAGAGGATGAAGGCAAGGAGAGACCATTAGTTCTTAAGAACAAGGCACCAAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTCCGGGGTAGGGTGACAGTTGCGTCTGTAAAAAATTTTCAGCTGATCACGGCAACCACACAACCTGCACCCGGTGCCCTGACACCCTCACAGCCCTCACAGCCTTCGCAGTCTGATCATGAAAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGAACATTTTCACAATGGATTATGGATATCCCCTATCTGCGTTTCAGGCTTTTGCCATTTGCCTGACCAGCTTCGACACAAAACTGGCATGTGAATAG 1284 0.4439 MSFRSIVRDVRDGFGSLSRRNFEVRLPGHHRKSQSSVHELQDPAPVIQNSCWASLPPELLRDVIKRLETSESTWPGRKHVVACASVCKSWREMCKEIVSSPEFSGKITFPISLKQPGFRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTKCTEYIITMDADNISRSSSRYIGKLRSNFLGTKFIIYDTQPPYNNSQLSQPGRSRRFYSKKVSPKVPSGSYNIAQVSYELNVLGTRGPRRMHCTIYSIPATSLEPGGIVPGQPELLPRSLEDSFRSISFSKSIDNSTEFSSSRFSDIIGVGNEEDEGKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLITATTQPAPGALTPSQPSQPSQSDHEKIILQFGKVGKNIFTMDYGYPLSAFQAFAICLTSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2083 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Lele08g2083 427 SUPERFAMILY F-box domain 43 96 IPR036047 GO:0005515
Lele08g2083 427 PANTHER TUBBY-RELATED 43 425 - -
Lele08g2083 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Lele08g2083 427 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Lele08g2083 427 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Lele08g2083 427 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Lele08g2083 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Lele08g2083 427 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Lele08g2083 427 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Lele08g2083 427 FunFam Tubby-like F-box protein 47 100 - -
Lele08g2083 427 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Lele08g2083 427 FunFam Tubby-like F-box protein 109 427 - -
Lele08g2083 427 Pfam Tub family 113 422 IPR000007 -
Lele08g2083 427 Pfam F-box domain 52 99 IPR001810 GO:0005515
Lele08g2083 427 SUPERFAMILY Tubby C-terminal domain-like 101 427 IPR025659 -
Lele08g2083 427 Gene3D Tubby Protein; Chain A 110 427 IPR025659 -
Lele08g2083 427 Gene3D - 47 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2083 Lele-ChrLele08 17700767 17703383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2083 1 427 TUB Transcription Factor Family AT1G76900 68.845 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele08g2083 Tub 3.5e-113 CL0395