Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2056 ATGTTAAGTATTGTCAAATATCGTGGCATCTTTGTTGCTGTACAAGCCAATTTTCCACCATCATTAATCCCTCATGTTGCATTGAGAAATTGTCATTTTGAGACAGAAGGGGGTCAAAATGCTTTGAGTAAAAAATTTAAATTGTCACCAACCAGCATGCAAAGCAGAGTTGGAATTTTTTGGGATTTAGACAACAAACCACCCAAGTCATTGCCACCTCATGAAGCTGCTACTAAGCTGAAAGCAGCTGCATCTCACTTTGGTGTTGTTAAGCATATGGTAGCTTATGCAAATCGTCATACTTTTAGCCATGTCCCTCAAAATGTTAGGGAACAAAGAAAAGAAAGGAAATTGCTAAACCATTTAGAGAACAAGGATATGATTAAGCCAGCTGAACCTTATCTTTGCCGGGTCTGTGGGAGAAAATTTTATACAAATGAGAAGCTTATTAAGCATTTTAAGGAAATACATGAGCGTGAGCACATAAAAAGATTGAACACAATAGAGTCAGCAAGGGGGAACAGGAGGGTGAAGCTGGTTGCTAAGTTTTCAATGAAAATGGAGAAGTATAAGAAAGCGGCAAGGAGCATATTGACTCCCAAAGTGGGGTATGGTTTGGCAGATGAGATAAAACATGCAGGGTTTTGGGTTCGGACTGTGTTGGATAAGCCACAAGCCGCAGATATTGCATTGAAAGGTCACATGGTAGATATGATGGATAATAAGCAGGTTGAGTGTGTGGTTCTTGTTTCAGATGATTCTGATTTTGCTGATGTATTAAAGGAGGCAAAGTTACGATGTCTCAAGACAGTTGTCGTTGGGGATACTAATGATGGGATCTTGAAGAGGACTGCTGATGCTGCCTTTTCATGGGAGGAAATTCTGATGGGGAAGGCGAAGAAGGAGGCAGTATCAGTTGTTGAAAAGTGGAAGGATCGTGATATTTTGAAAAGATTAGAGTGGACATACAATCCAGAGGTGGAGAAAAAGAAATTCGGTCCACATGATATGGTTACTGAGGATGAAGATAGTAGTGATACCTTTGATGAAGTTGATGGTGCCTATAGCAATAAGGAAGACTCAAATGCTTGGTGGGAATTGGATACTGATGATAATTTTATAAATAAACAATCAGAAAAATCATGA 1146 0.3935 MLSIVKYRGIFVAVQANFPPSLIPHVALRNCHFETEGGQNALSKKFKLSPTSMQSRVGIFWDLDNKPPKSLPPHEAATKLKAAASHFGVVKHMVAYANRHTFSHVPQNVREQRKERKLLNHLENKDMIKPAEPYLCRVCGRKFYTNEKLIKHFKEIHEREHIKRLNTIESARGNRRVKLVAKFSMKMEKYKKAARSILTPKVGYGLADEIKHAGFWVRTVLDKPQAADIALKGHMVDMMDNKQVECVVLVSDDSDFADVLKEAKLRCLKTVVVGDTNDGILKRTADAAFSWEEILMGKAKKEAVSVVEKWKDRDILKRLEWTYNPEVEKKKFGPHDMVTEDEDSSDTFDEVDGAYSNKEDSNAWWELDTDDNFINKQSEKS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2056 381 CDD PIN_LabA-like 144 275 - -
Lele08g2056 381 Pfam NYN domain 207 286 IPR021139 GO:0004540
Lele08g2056 381 SUPERFAMILY beta-beta-alpha zinc fingers 131 160 IPR036236 -
Lele08g2056 381 Gene3D - 50 295 - -
Lele08g2056 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 162 IPR013087 -
Lele08g2056 381 Gene3D Classic Zinc Finger 136 160 - -
Lele08g2056 381 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 50 375 - -
Lele08g2056 381 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
Lele08g2056 381 MobiDBLite consensus disorder prediction 332 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2056 Lele-ChrLele08 15932612 15933757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2056 44 372 C2H2 Transcription Factor Family AT4G12240 61.310 8.81e-149 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g2056 NYN 1e-07 CL0280