Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2016 ATGCAAATTCTGCAAGCTCGACTTAACTATGGAAACTATTCTCATATAGCATCCTCACCTCTCTCCATTCCACCACCACCTCCCTCCTCCATGGCCGACCACCAGCCTCCTCCTCCGTCGCCGCCACCACCAAAAGGATATAAATTAACAGCCTCTTCAATCTTCTACGCCAAAAGCACCACCACGATTCCGCCATTCTTACATCTTTTCAAATGCTGTACCACTGCAAACCCTCCTTCTTACATCCTCAAGCATGTTTCCCTCACCGCCTACCCCTCCCAAATCCTCGCCATTGTCGGCCCAAGCGGCGCCGGCAAGTCCACCCTCCTCGACATCCTTGCCGCCCGCACCTCCTCCACCTCCGGCACTCTCCTCCTCAACTCCTTCCCCTTTAATCCTTCCTCCTTCCGCAAGCTATCTTCTTACGTCCCACAACATGACGCCTGCCTCCCCCTCCTCACCGTCGCCGAGACCTTCGCCTTCGCCGCCCGCCTCCTCCAGCCAAAGCCCTTCGATACCACCTCTCTTCTCGCCGAGCTCGGCCTCAGTCACTTAGCTCACACCAGGCTGGCAGATGGACTTTCCGGTGGAGAACGAAGACGGGTCTCCATCGGCCTCAGCCTCCTCCACGACCCGGCCGTGTTGCTTCTCGATGAACCCACCTCGGGCCTTGACAGCACCGGTGCTTTTAAAGTCATGCAGATTCTAAAATCAATCTGTGTTTCACGTCACCGAACCATTGTGCTATCTATTCATCAACCAAGTTTCAAGATTTTATCTGTCATTGACAGGATCTTACTTCTCTCTAAAGGATCAGTTGTTCATCATGGAACTCTTGCTTCGCTTCAGAGTTTTCTTCACACTAATGGCTTCTCTGTGCCTCCTCAGCTCAATGCGTTGGAATACGCCATGGAAATATTAAATCAACTCGATGAACTTGAACCCATGAACAAGACTACTGACGAAGAAAGTCCTGCAAGTTCCCCATCATCTCAGAATTTAGCCACAACTACTTCATCAAGAAAGTTGATCCGTTATAGAAGCTCAAGAATCCATGAAATCTGTGCTCTTTACAGCAGATTTTGGAAGATAATTTACAGAACAAAGCAGTTACTTTTGACAAACACATTAGAAGCACTTTTCGTAGGCCTTGTTCTTGGAACGATTTACATCAACATTGGCTTCGGTAAGGAAGGGATTGAGAAAAGATTCGGTCTTTTTGCCTTCTCTCTCACTTTCCTCCTTTCTTCCACCACCGAAACTCTCCCGATCTTCATCGGCGAGAGACCGATCTTACTGAGAGAAACATCAAGTGGGATTTATAGGTTATCTTCTTACATCATCGCCAACACACTCGTTTTCTTACCATACTTACTAGTTATCGCTGTTATCTACTCTATTCCAGTCTACTTCTTAGTGGGTTTGTGTGCTTCTTGGATTTCATTTGCGTACTTCGTTCTTGTCATTTGGCTCATAGTTCTAATGGCTAATTCATTTGTCCTCTTCTTAAGCTCTGTTGCTCCTAACTACATTGCTGGAACTTCGCTCATGACAGTTCTTCTTGCTGCGTTTTTTCTGTTTTCTGGTTATTTCATTTCCAAAGAAAGCTTACCCAAATACTGGCTCTTCATGTATTTCTTCTCTATGTACAAGTACGCTCTTGATGCTCTTCTCATTAACGAATACTCTTGTTTGATCACGAGATGTTTCATATGGTACGAAGAAAATGATGGAGAATGTATGGTTACAGGAGGTGACGTGATGAACAAGAGAGGACTCAGTGAAGCACAGAGATGGATTAATGTGTATGCTTTGCTTGGTTTCTTTGTGTTGTATCGTGTGCTTTGTTTGTTTGTGTTGATCAGAAGGGTTTCAAGATCCAAAAGTTAG 1890 0.4603 MQILQARLNYGNYSHIASSPLSIPPPPPSSMADHQPPPPSPPPPKGYKLTASSIFYAKSTTTIPPFLHLFKCCTTANPPSYILKHVSLTAYPSQILAIVGPSGAGKSTLLDILAARTSSTSGTLLLNSFPFNPSSFRKLSSYVPQHDACLPLLTVAETFAFAARLLQPKPFDTTSLLAELGLSHLAHTRLADGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTGAFKVMQILKSICVSRHRTIVLSIHQPSFKILSVIDRILLLSKGSVVHHGTLASLQSFLHTNGFSVPPQLNALEYAMEILNQLDELEPMNKTTDEESPASSPSSQNLATTTSSRKLIRYRSSRIHEICALYSRFWKIIYRTKQLLLTNTLEALFVGLVLGTIYINIGFGKEGIEKRFGLFAFSLTFLLSSTTETLPIFIGERPILLRETSSGIYRLSSYIIANTLVFLPYLLVIAVIYSIPVYFLVGLCASWISFAYFVLVIWLIVLMANSFVLFLSSVAPNYIAGTSLMTVLLAAFFLFSGYFISKESLPKYWLFMYFFSMYKYALDALLINEYSCLITRCFIWYEENDGECMVTGGDVMNKRGLSEAQRWINVYALLGFFVLYRVLCLFVLIRRVSRSKS 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2016 629 Pfam ABC transporter 83 222 IPR003439 GO:0005524
Lele08g2016 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 285 IPR027417 -
Lele08g2016 629 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524|GO:0016887
Lele08g2016 629 FunFam ATP-binding cassette transporter 72 288 - -
Lele08g2016 629 Pfam ABC-2 type transporter 252 325 IPR043926 GO:0140359
Lele08g2016 629 MobiDBLite consensus disorder prediction 24 44 - -
Lele08g2016 629 Pfam ABC-2 type transporter 353 562 IPR013525 GO:0016020|GO:0140359
Lele08g2016 629 SMART AAA_5 92 272 IPR003593 -
Lele08g2016 629 MobiDBLite consensus disorder prediction 317 336 - -
Lele08g2016 629 MobiDBLite consensus disorder prediction 320 336 - -
Lele08g2016 629 Gene3D - 70 324 IPR027417 -
Lele08g2016 629 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 49 614 - -
Lele08g2016 629 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 67 295 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2016 Lele-ChrLele08 15139007 15141234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2016 76 289 Calmodulin-binding Proteins AT2G36910 27.386 1.08e-16 82.4