Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2012 ATGGGAAGGGGTAGGGTTGAACTGAGGTGTATTGAGAACAAAATCAACCGTCAAGTGACGTTTTCAAAGAGGCGAAGTGGACTTTTTAAGAAAGCTCAAGAAATCTCTGTGCTCTGTGATGCTCAAGTTGCTTTGATTATCTTCTCCACCAAAGGCAAGCTCTTTGAATTCTCCTCTAATTCCAGCTTGGATGGCATTCTGGAACAATACGAGAGACAAACGCACACAGAACAACTTGCTGAAGCTAACATCCAATCTCAGGGAAACTTGTCCTTGGAGTTCTACAAACTTACCACCAAAGCTAAAATCTTGGAGAAGAACATAAGGAACTATGGAGGACATGATCTTGATGTCTTGAGTTTGAGAGAGCTTCAGAACTTAGAGACACAGATCGACATAGCAATAAAGCGTATTCGAACAAGAAAGAATCAACTGATGAATGAATCCATCTCGGAGCATCAGAAGAAGGCAAGGGCATTGCAGGAGCAAAACAACATACTAGCAAAGAAGGTGAAGGAGAAAGAGAAGTCACTGACTGAAAATCCACACAAGGAGAAGTACACTCAGGGACAAAATTTATCTGGCTTCAATTTTCCTGAACCACAGCTGCACCTTCCTACTTTAACTCTCGGTGTGAGTTTACAAGCAAGAGGAGCAGAAGAGGAAGAAGAGGTGGAGGCTGATCAGACTGCACCCAGAAGCAGCACCGTCATGCCACCATGGATGTTGCGTCACTTGATCAGATAG 747 0.4351 MGRGRVELRCIENKINRQVTFSKRRSGLFKKAQEISVLCDAQVALIIFSTKGKLFEFSSNSSLDGILEQYERQTHTEQLAEANIQSQGNLSLEFYKLTTKAKILEKNIRNYGGHDLDVLSLRELQNLETQIDIAIKRIRTRKNQLMNESISEHQKKARALQEQNNILAKKVKEKEKSLTENPHKEKYTQGQNLSGFNFPEPQLHLPTLTLGVSLQARGAEEEEEVEADQTAPRSSTVMPPWMLRHLIR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2012 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Lele08g2012 248 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Lele08g2012 248 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Lele08g2012 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele08g2012 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lele08g2012 248 MobiDBLite consensus disorder prediction 173 200 - -
Lele08g2012 248 MobiDBLite consensus disorder prediction 216 242 - -
Lele08g2012 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele08g2012 248 Coils Coil 124 177 - -
Lele08g2012 248 MobiDBLite consensus disorder prediction 184 198 - -
Lele08g2012 248 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lele08g2012 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele08g2012 248 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele08g2012 248 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lele08g2012 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele08g2012 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele08g2012 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele08g2012 248 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2012 Lele-ChrLele08 15057836 15069877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2012 1 237 MADS-box Gene Family AT1G26310 49.194 7.87e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele08g2012 K-box 7.6e-21 No_clan