Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2009 ATGGGGAGGGGAAGGGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTTACCTTCGCTAAGAGAAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCAGAAGTTGCCCTCATCGTCTTCTCCAATCGTGGCAAGCTTTATGAGTTCTGTAGCACTTCTAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGTTATGGTTCTGTGGAAGTGAACAAACCAGCCAAGGAGCTTGAGACCAGTTACCGCGAGTACTTGAAGCTGAAAGGAAGGTTGGAATCTCTCCAGAGGACACAAAGAAACCTTCTAGGAGAAGACTTGGGTCCATTGAACTCAAAGGAACTGGAGCAGCTTGAGCGCCAACTTGATTCATCTCTAAAGCAAGTCAGGTCCATCAAGACCCAATTCATGCTGGACCAGCTGAGCGATCTTCAAAATAAGGAGCAGATTCTGGTTGAAGCAAACAGAGCATTGACTATGAAGCTTGAAGAAATCAATTCAAGAAACAACTATAGGCAATCTTGGGAAGGTGGTGATCAAAGCATGCAATATGATTCCCAAAATGCAAACTCACAGGGCTTCTTCCAGCCTTTGGACTGCAATCCCACATTACAGATTGGGTACAATGCTGAGGGTTCAGATCAGATGACAGCAACAACACAAGGTCAGCAAGCTAATGGGTTTATTCCTGGATGGATGCTTTGA 732 0.4495 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCSYGSVEVNKPAKELETSYREYLKLKGRLESLQRTQRNLLGEDLGPLNSKELEQLERQLDSSLKQVRSIKTQFMLDQLSDLQNKEQILVEANRALTMKLEEINSRNNYRQSWEGGDQSMQYDSQNANSQGFFQPLDCNPTLQIGYNAEGSDQMTATTQGQQANGFIPGWML 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2009 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele08g2009 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Lele08g2009 243 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele08g2009 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele08g2009 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele08g2009 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele08g2009 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele08g2009 243 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lele08g2009 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele08g2009 243 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Lele08g2009 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele08g2009 243 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lele08g2009 243 Coils Coil 124 144 - -
Lele08g2009 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele08g2009 243 FunFam MADS-box transcription factor 1 13 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2009 Lele-ChrLele08 14969906 14978052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g2009 1 243 MADS-box Gene Family AT5G15800 73.664 6.30e-124 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele08g2009 K-box 2e-26 No_clan