LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele08g2008	ATGAGGATGTGGTTCATCAAGGTGTTGTTGCTCATTCCATTAACAGCCATGGGAGAAGATGCTGAAGCTCAATCCCTACATGGTTGCCTCGACAAATGTGGAAATGTCAGTATTCCATATCCATTTGGTGTCGGTAAAAATTGTTTCCGGCAGGGCGAGAAACGGTTTAATCTCACATGTCAGAACTCTACCTTATACACTGGAAACGTCAAGTGTTCTAATATATCCCTCCAAGGTCATATGGATGTGTTCATGTCTGTGGCTTTTAAATGTTTCAATGAATCAGGAGTTGCAGGTGTTAATGTATCTTCTCTTAGAATGGGTGCAGCTTTCACTGTTTCTAGCATAGCAAACAACTTCATGAATGTCGGTTGTGACACATACGGCTACCTGGATAGTTTCGTTAACAATACTGTTTATTCCACCGGCTGTTTTTCGCGGTGTCGGACACTTCAGAGCAAGACGTATGCTAAAAATAATTCAGGGATTGGGTTTTGCCAAGTGAATATTCCCACTGGAATGAGGAATATCACTTTTAATGCAAATAGCTTCAATAACCACACGAATGTGTCGAGATTCAACAATTGTAGCTATGCATTTGTTGCCAAAAAGGATTGGTATAATTTCTCCTTTGAGCATCTAAAGCACTTCCCCTTTGACAAGTCCTTGCTTGTGCTAAATTGGACAGTTTCAAATGTTACTTGTGATGTTGCTTTGAGAAGACCAGACTATGCATGTAACAATCACACCCAGTGTGTGGATTCTCCTGATGGATTTGGATACAATTGCAAATGCGATAAAGGTTTCGATGGAAACCCGTACCATCCTGATGGATGTCATGATATAGACGAATGTAGTCAGGATCATTCAAAGAACAATTGCAGCGTTATGGAATCTTGTGTCAACACTCTTGGGGGTTTTCAATGCAAACCAAAAACAAGTCTATATATAAGGATCATCATAGGTACTAGTGTAGCCTTAACCGCTTTGGTTGTTAGTGTGTCTTGGCTATACTTGGTATACCAAAAGAGGAATCTCATCAAGCAAAAAGAAAAATATTTTCAACAAAATGGTGGCTTGATCTTGCAACAACGACTTTCAGTTAAAGAAGCTTCCTCCCAAACAGCTAAAATCTTCACCAAGGAGGAGTTAAAAAGAGCAACCAACAACTATGATGATAGCTTAATCATTGGCAAAGGAGGATATGGAACTGTTTATAAGGGATTCCTCAAAGACCACAAAGTTGTCGCCATCAAGAAGTCCAAACTTGTGGATCAAAACCAAATCGAACAGTTCATCAACGAGGTTGTTATCCTCTCACAAATAAATCATAAGAACGTGGTGAAGCTACTTGGATGTTGTTTGGAAACTGAAATTCCTTTGTTAGTTTATGAGTTTATCAACAATGGCACGCTTGATGCTTACATTCATCCCAGCCAAGACACGGCTTCTTCAAAGATATCTTGGGAAACACGTTTGAAGATAGCAGCAGAGACAGCAGAAGCACTATCATATTTGCACTCTAGTGCCTCCATACCCATAATCCATAGAGATTTCAAGCCCTCCAACATACTTTTAGATGAAACCTACACAGCCAAAGTGTCCGATTTTGGAGCTTCGAGGTTGGTTCCACTGGATCAAACACAATTAGCCACAATGGTACAAGGAACTCTTGGATACTTGGATCCAGAATACTTGCAAACGAACCAACTAACCGACAAAAGCGATGTTTACAGTTTTGGAGTGGTGCTCGTAGAGCTACTAACAGGGAAGCGAGCTCTTTCATTTGATAAACCAGAAGAGGAAAGATGCCTTGCCATGCACTTCCTTTCATGCTTGAAGAAAGGCCAATTGTTTGAAGTACTTGAAGTTGGCATAGTGAATGATGAAAATAAGGAGATGTTAAGGGAAGTGGCTTCACTTGCTAAGAGATGCTTAAGACTTAGAGGAGATGAGAGACCTAGCATGAAAGAAGTTGCAATGGAGTTAGAGGGAATAAGGATCGCAAGGAATAAGCATTCATGGGTAAACAATGAAAATAATTCAGAAGAAATTCAACCATTATTGCTTGGGGAGACATTTGGTATTAGTGAAAGTGGGGATAGCATCAGTTGTAGAAACACAGGAGGATATAGTATCACAGATCATGTGTTGAATGACTTGAATGATGGAAGGTGA	2178	0.4008	MRMWFIKVLLLIPLTAMGEDAEAQSLHGCLDKCGNVSIPYPFGVGKNCFRQGEKRFNLTCQNSTLYTGNVKCSNISLQGHMDVFMSVAFKCFNESGVAGVNVSSLRMGAAFTVSSIANNFMNVGCDTYGYLDSFVNNTVYSTGCFSRCRTLQSKTYAKNNSGIGFCQVNIPTGMRNITFNANSFNNHTNVSRFNNCSYAFVAKKDWYNFSFEHLKHFPFDKSLLVLNWTVSNVTCDVALRRPDYACNNHTQCVDSPDGFGYNCKCDKGFDGNPYHPDGCHDIDECSQDHSKNNCSVMESCVNTLGGFQCKPKTSLYIRIIIGTSVALTALVVSVSWLYLVYQKRNLIKQKEKYFQQNGGLILQQRLSVKEASSQTAKIFTKEELKRATNNYDDSLIIGKGGYGTVYKGFLKDHKVVAIKKSKLVDQNQIEQFINEVVILSQINHKNVVKLLGCCLETEIPLLVYEFINNGTLDAYIHPSQDTASSKISWETRLKIAAETAEALSYLHSSASIPIIHRDFKPSNILLDETYTAKVSDFGASRLVPLDQTQLATMVQGTLGYLDPEYLQTNQLTDKSDVYSFGVVLVELLTGKRALSFDKPEEERCLAMHFLSCLKKGQLFEVLEVGIVNDENKEMLREVASLAKRCLRLRGDERPSMKEVAMELEGIRIARNKHSWVNNENNSEEIQPLLLGETFGISESGDSISCRNTGGYSITDHVLNDLNDGR	725

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele08g2008	725	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	21	674	IPR045274	GO:0007166
	Lele08g2008	725	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	514	526	IPR008271	GO:0004672\|GO:0006468
	Lele08g2008	725	Gene3D	Phosphorylase Kinase; domain 1	356	466	-	-
	Lele08g2008	725	SUPERFAMILY	Protein kinase-like (PK-like)	371	664	IPR011009	-
	Lele08g2008	725	FunFam	Wall-associated receptor kinase 2	361	466	-	-
	Lele08g2008	725	Pfam	Wall-associated receptor kinase galacturonan-binding	29	79	IPR025287	GO:0030247
	Lele08g2008	725	FunFam	Wall-associated receptor kinase 2	467	687	-	-
	Lele08g2008	725	CDD	STKc_IRAK	397	666	-	-
	Lele08g2008	725	ProSitePatterns	Calcium-binding EGF-like domain signature.	281	309	IPR018097	GO:0005509
	Lele08g2008	725	Gene3D	Transferase(Phosphotransferase) domain 1	467	687	-	-
	Lele08g2008	725	Gene3D	Laminin	234	283	-	-
	Lele08g2008	725	Pfam	Protein kinase domain	394	659	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele08g2008	725	ProSiteProfiles	Protein kinase domain profile.	391	676	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele08g2008	725	ProSitePatterns	Protein kinases ATP-binding region signature.	397	420	IPR017441	GO:0005524
	Lele08g2008	725	Gene3D	Laminin	284	316	-	-
	Lele08g2008	725	Pfam	Calcium-binding EGF domain	281	310	IPR001881	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele08g2008	Lele-ChrLele08	14956548	14960317	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele08g2008	1	725	Receptor kinase-like Gene Family	AT1G21230	42.119	0.0	573

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Lele08g2008		Pkinase	4.7e-52	CL0016