Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1926 ATGCCGGATTACAGTCTTGTAAAATTCCAAAGAGGAAAGTGGAAGAAGAGAGATTTCTTGGCTGTCGCTTGCTTGTGTTATGTTTCAAAGGTGAATGCCATTGCTTCCTAAGATGAAGAAGATGGATCATGTGAAGAACTAGAAGAAGATCCTGTTGAAGAAGTTGAGCAAAAGCAGCTGGAAGAAACAACTCTTAATGGGAACGATCGCAAATCAGGATTTGTTAAATCAAATGATAAGAAGAGGTATCTGAATGTTGCATCTGGTGAATTAACTACGTTGCTATGCTATCAGTCACAAAAGAAGTGCAAGCAAGTTGGATCTTCTGGTCTGAAATTAGAATCTGAACCTTCAGATTCGGAGCTCAATAATGATTCTGTCACTGCAGTGGCATCTATTGATAATTCTACTTCCAAAGAAGGTACTGGAAGTTCTGGAAAACGAAGGCGCAGCAGATGGGAACCACAGTCTGAGGATGATGGTGTAAAAGACGATCAGACTTGCAAGAGGAGGAAAACCAGGTGGTCCGATGAGGACACTCAACTAAAAATTCTTGGGCCACTTCAGCTGCCTGATTTCACTAATAATTTTCTTGTTGGATATGAGAATGATCCTGAAATTCAAGGGTTGAAAGATGAGCTTTTTGAGATTAATAGAAGATTGCATGGACCTCTTCATGATGATAGGCTTGAGGAGGAAAGATCTCCTTCACCAGAAGCAATATATGATGACCTTGGCATCAGAATAAACACAAGAGAAGTAAGACTTCGTCAGAAACTTGTCCAGAAACGTCAAAATATCATATCAAAATTGATCATATCAAACCGAGGTTTTAGCCCTCCTGATTACAAGCCTCCAAAGCTCTTCAAAAAACTTTACATCCCGATGAGAAAATATCCAGAGTACAATTTTGTTGGCCTTATAATTGGGCCTCGTGGAAACACACTGAAGAGAATGGAAAATGAATCTGGGGCCAAGATTCATATAAGAGGAAAAGGATGCTCCAAAACACCCAACAAATCTGCCTCTTCTAAAGAGGACTTACATGTGTATATAGAAGCAGACAACAAAAATTCTCTGGATGCTGCAGTTGCCATGGTTGAAATATTGCTAATCCCTGTTGAAGGAAGAAATGAGCACAAGGAGGCTCAATTAAAGGAGCTGGCCATGCTGAATGGAACAGCTAGGGATGAAAATATGTGCTATGTTTGTGGTGATGAGGGACATCTGTCATATGCCTGCCCTGACCTTCAATCAACTTTCAAAGCGAACTCATTCTATACATGTTTTAGTGCCAGTCCTTTGGATATGCTATCTCCACAGAATGAATCTGTGCAGGGTTCTGGATTTGGTTTTAGTTTCAGTTCAACACAGAGTAGACAAGGGTGGCCTGAAAATAAATCATTGATGAATAATCTTTATGTTGGCAATCTGCCTCAAGCCTTAGATGATGATAGATTGTCTGAGCTGTTTTCTCCATTTGGTAAGATCCTTGAAGTAAAAGCTATAAAGGATCGAACAACTGGAATTTGTAGAGGTTATGGATTTGTCAAGTTTGACAATGCCACAGATGCACAAGTAGCTGTGACTCATATGAACGGTTTTAAAATGGATGGGAGGGTTTTGAAGGTAAGGATAGCTAAGCTTTTGTCAAATACTGAATCTTCAAGCTTGAACCTCCTTCCACGGCGCTCTGGTCCTACAGGCCCATTACATTTTATGCTGCCAGAACATCCAACTTCGTTTCACAACAGCAGCGGCATGAATCTGTTTTCACCCTCCATGAACTCACTGCATTGCGATCTTAAAAAGGATGGAAGCTTTTCCCATCCAATCTACTGCTCAAGAACTTCTGATTTTAGTAATTCTGGCAAAATGCATTTTTCATGCAACTCTTCAGATCAAAGTGTTTTGTTATCTGGTAGTTCGATTTTAGAGAGTCCTGGCTCCCAATATCAGTCATATTTTATGACGCCGCCACTCCATAGAGCTGCACTGCTCTACCCTGATCATAGATTAGAAGATACGGATTCTTTCCCTTCTTCATTGCAGAGAAGGTATTACAGGGCACTTAATTGA 2079 0.404 MPDYSLVKFQRGKWKKRDFLAVACLCYVSKVNAIASXDEEDGSCEELEEDPVEEVEQKQLEETTLNGNDRKSGFVKSNDKKRYLNVASGELTTLLCYQSQKKCKQVGSSGLKLESEPSDSELNNDSVTAVASIDNSTSKEGTGSSGKRRRSRWEPQSEDDGVKDDQTCKRRKTRWSDEDTQLKILGPLQLPDFTNNFLVGYENDPEIQGLKDELFEINRRLHGPLHDDRLEEERSPSPEAIYDDLGIRINTREVRLRQKLVQKRQNIISKLIISNRGFSPPDYKPPKLFKKLYIPMRKYPEYNFVGLIIGPRGNTLKRMENESGAKIHIRGKGCSKTPNKSASSKEDLHVYIEADNKNSLDAAVAMVEILLIPVEGRNEHKEAQLKELAMLNGTARDENMCYVCGDEGHLSYACPDLQSTFKANSFYTCFSASPLDMLSPQNESVQGSGFGFSFSSTQSRQGWPENKSLMNNLYVGNLPQALDDDRLSELFSPFGKILEVKAIKDRTTGICRGYGFVKFDNATDAQVAVTHMNGFKMDGRVLKVRIAKLLSNTESSSLNLLPRRSGPTGPLHFMLPEHPTSFHNSSGMNLFSPSMNSLHCDLKKDGSFSHPIYCSRTSDFSNSGKMHFSCNSSDQSVLLSGSSILESPGSQYQSYFMTPPLHRAALLYPDHRLEDTDSFPSSLQRRYYRALN 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1926 692 MobiDBLite consensus disorder prediction 143 173 - -
Lele08g1926 692 MobiDBLite consensus disorder prediction 110 142 - -
Lele08g1926 692 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 471 549 IPR000504 GO:0003723
Lele08g1926 692 Gene3D K Homology domain, type 1 281 402 IPR036612 GO:0003723
Lele08g1926 692 Gene3D - 440 556 IPR012677 -
Lele08g1926 692 CDD SF1_like-KH 290 396 - -
Lele08g1926 692 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 543 IPR000504 GO:0003723
Lele08g1926 692 ProSiteProfiles Type-1 KH domain profile. 303 367 - -
Lele08g1926 692 ProSiteProfiles Zinc finger CCHC-type profile. 401 416 IPR001878 GO:0003676|GO:0008270
Lele08g1926 692 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 288 403 IPR036612 GO:0003723
Lele08g1926 692 Pfam KH domain 303 367 IPR004088 GO:0003723
Lele08g1926 692 Gene3D - 204 280 - -
Lele08g1926 692 PANTHER RNA-BINDING PROTEIN RELATED 136 589 IPR045071 -
Lele08g1926 692 SMART rrm1_1 472 545 IPR000504 GO:0003723
Lele08g1926 692 Pfam Splicing factor 1 helix-hairpin domain 171 284 IPR032570 -
Lele08g1926 692 SUPERFAMILY RNA-binding domain, RBD 453 551 IPR035979 GO:0003676
Lele08g1926 692 SMART kh_6 288 372 IPR004087 GO:0003676
Lele08g1926 692 MobiDBLite consensus disorder prediction 110 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1926 Lele-ChrLele08 13703901 13707038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1926 467 555 Eukaryotic Initiation Factors Gene Family AT1G49760 34.831 4.38e-07 51.2