Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1922 ATGGCCCCACCGCCGGCGGATCACAAAGGCGAGTCCACGGCCGGTGAGTCTCAGAGATCTATTCCGACGCCTTTTTTAACGAAAACTTATCAACTTGTTGATGATCATACCATAGACGATGTCATATCCTGGAACGAAGATGGATCCAGTTTCATCGTTTGGAATCCTACGGGATTTAGAAAAGTAGTACCGGATCGGTGGGAATTCACTAACGAGTGTTTTCGCAAAGGCAAGAAACAACTTCTATGTGAAATTCAGCGTCGGAAAATCTCATCGCCTTCGCCACCACCAGCAGGTGTAACTGCGGTAGCGTCAGTTCCGGCTACTGCGCCGGCGACATTGACGGTAATACCAACGGCGAAGCGTATCATATCGCCTTCAAACTCAGGGGAAGAACAAGTCATTTCGTCGAATTCATCGCCGACCAGAGCTCCGGCTGAACTCTTAAACGAGAACGAGAGGCTGAGAAAAGAAAATGTTCAGCTGATCAAGCAATTAGCGGAGATGAGATCTCTGTGTAACAACATATTCAATCTAATCTCAAAGTACGCAAATGACCAAAATAGCAGTTTCCAAGGTAGAGCTAGTGACTTCACCACCGTGAAACCGCTCGATTTGATGCCGGTTGCGCGTAAGTCAGGTAACATAGAAGCTGTGACGATGGTGGAAGACGAAATGAATCCGAAGCTGTTTGGGGTGGCGATCGGTGCGAAACGATCACGAGAAGTTGAAGGCGGGGGCGGAGGCGATCATGTGATAACCTTGTACCGGGCGGGGCCCAAATCAGAGCCGTTGGCTTACCAAAGGCATCGAGATAATCAGGAAGCGCCGTGGCTGAACCAACGCCATAACGAAAATCAGAGAGTTTGCAATTAA 876 0.4886 MAPPPADHKGESTAGESQRSIPTPFLTKTYQLVDDHTIDDVISWNEDGSSFIVWNPTGFRKVVPDRWEFTNECFRKGKKQLLCEIQRRKISSPSPPPAGVTAVASVPATAPATLTVIPTAKRIISPSNSGEEQVISSNSSPTRAPAELLNENERLRKENVQLIKQLAEMRSLCNNIFNLISKYANDQNSSFQGRASDFTTVKPLDLMPVARKSGNIEAVTMVEDEMNPKLFGVAIGAKRSREVEGGGGGDHVITLYRAGPKSEPLAYQRHRDNQEAPWLNQRHNENQRVCN 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1922 291 SUPERFAMILY "Winged helix" DNA-binding domain 22 88 IPR036390 -
Lele08g1922 291 Pfam HSF-type DNA-binding 25 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g1922 291 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 58 209 IPR027725 -
Lele08g1922 291 SMART hsfneu3 21 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g1922 291 Gene3D - 17 65 IPR036388 -
Lele08g1922 291 MobiDBLite consensus disorder prediction 1 21 - -
Lele08g1922 291 Coils Coil 152 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1922 Lele-ChrLele08 13669302 13670349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1922 1 291 HSF AT5G62020 41.018 1.73e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele08g1922 HSF_DNA-bind 6.7e-07 CL0123