Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1907 ATGTTGAGCTCTTGGGCCGTACATCCTCCGTTGGAACAGTTTAGTATGAGCTCCTCGGTGCTCTACTCTCCTCCCACTCGCTTCTACTCTCTCACACCAACACACTCTCTCTCCTCTCTCTCTCCCGTTCTTCTTCAACTACCCCATCTTCCCTCTTCTTCCCTCTCCCTGCGAAGCAGAACTTTGTCAAAGACAATTACAACCCCACTTGCCTATGTGACTGGACCCGCATCCGACCCTATTTTCAGTGAGAGTGATCCTAGGATAGATGGGTCGGATCCCCGGCCGGAGAAAGTCCAGCCGCCCACCGTCATTAGCGGGGGGCTTCTCTGGATGCTTTTGATGAAACACAAACTGCGGCTTGTGGTTTCAGTTGTGACTCTAATTTGTTGCACCATTTGTACTCTTTCTATGCCCCTATTTTCTGGTCAATTTTTTGAGGTTCTAATTGGGGCAAGACCAGAGCCATTATGGAGGCTGCTTAGTAAGGTTGGGATGCTGTATGCCCTTGAACCACTTTTAACTGTTACTTTTGTTACAAACATGAACATAATGTGGGAGAAGATTATGTCAACACTGAGAGCTCAGATCTTTGGAAGGATATTTATGCAAAAGGTGGAATTTTTTGACAAATACAAGGTTGGTGAACTCACCGGTTTGCTAACATCCGATTTGGGTTCTCTTAAAGATATTGTGAGTGAAAATGTTGCAAGGGATCGTGGATTCAGGGCATTATCTGAGGCAAGCATTTCTACACCAATCAGAAGTCATTGGGACAATATGCATACTTTTTGCTTTATCACCTCAACTTGCTCCAATTTTGGGTATCCTAGTGCTCACAGTTTCTGTTTCAGTTGATCAACTCTGCCGGTGTTTAAAGCACATGGGTTGGTTCAAGCATCCATATCTGACTGTGTAGCAGAAACATTTTCTGCTATCCGTACAGTAAGATCCTTTGGTGGAGAGAAACGCCAAATGTTTAAGTTTGCTAACCAGGTTCTTTCTTTCCAATCAAGCGGGATAAAGCTTGCCACTTTTAAATCTCTAAATGAGTCCATGACTAGAGTTGCTGTTTATGTTTCTCTGCTGGCATTATATATCCTTGGAGGAAACAAAGTTAAAGCGGGTGAACTCTCTGTTGGAACTGTGGCGTCTTTTATTGGATACACTTTCACATTAACTTTTGCTGTTCAAGGAATGGTTAATACTTTTGGAGATCTACGTGGAGCTATTGCTGCTGTTGAGAGGATCAACAATGTTACTTCTGAGGTTCAAATTGATGAAGCCCTTGCTTATGGCTTAGAAAGAGAACTGAAACAGAAAGAATTAAATGATGATAACTATAAAATGTTCTTCTCTGATAATTCTACTGAGAAAAACCAACAAAAATACTTGCAATGCATGTCAGCATTGAAATCATCAAGCAATTTGTACAGCTTAGCTTGGTCTGGAGATGTTTGTCTTGAAGATGTGTATTTCTCTTATCCCTTAAGGCCAGATGTGGAAATCTTACGTGGCTTAAATTTAACACTAAAATGTGGAACTATAACCGCATTGGTGGGTCCTAGTGGTGCCGGAAAAAGTACAATAGTGCAGCTATTAGCTCGATTTTATGAGCCAACAAGAGGACATGTAACAGTTGCTGGAGAGGATGTTCGAACATTTGACAAGAGTGAATGGGCTCGGGCTGTCTCTATTGTTAATCAAGAGCCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGGCTTCCAGATGATAATGTTTCTAAAGAAGATGTGATCAAGGCAGCAAAAGCTGCAAACGCGCACGACTTCATACTTTCACTTCCACAGGGTTATGATACACTTGTCGGTGAGCGTGGAGGCCTATTAAGTGGGGGACAGAGGCAGAGAATTGCTATTGCACGAGCACTCTTAAAGAATGCCCCAATCCTTATACTTGATGAGGCCACCAGTGCATTAGATGCAGTTAGTGAGAGGTTGGTCCAGGATGCTCTCAACCAGTTGATGAAGGGAAGGACAACATTAGTGATAGCTCACCGATTGAGCACAGTTCAAAATGCCCATCAAATTGCACTCTGCTCTGATGGCAAGATTGCAGAACTAGGAACACACTATGAGTTGTTGGCTAAGAAAGGCCAATATGCTTCACTGGTTGGTACTCAAAGGCTTGCATTTGAATGA 2193 0.4282 MLSSWAVHPPLEQFSMSSSVLYSPPTRFYSLTPTHSLSSLSPVLLQLPHLPSSSLSLRSRTLSKTITTPLAYVTGPASDPIFSESDPRIDGSDPRPEKVQPPTVISGGLLWMLLMKHKLRLVVSVVTLICCTICTLSMPLFSGQFFEVLIGARPEPLWRLLSKVGMLYALEPLLTVTFVTNMNIMWEKIMSTLRAQIFGRIFMQKVEFFDKYKVGELTGLLTSDLGSLKDIVSENVARDRGFRALSEASISTPIRSHWDNMHTFCFITSTCSNFGYPSAHSFCFSXSTLPVFKAHGLVQASISDCVAETFSAIRTVRSFGGEKRQMFKFANQVLSFQSSGIKLATFKSLNESMTRVAVYVSLLALYILGGNKVKAGELSVGTVASFIGYTFTLTFAVQGMVNTFGDLRGAIAAVERINNVTSEVQIDEALAYGLERELKQKELNDDNYKMFFSDNSTEKNQQKYLQCMSALKSSSNLYSLAWSGDVCLEDVYFSYPLRPDVEILRGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPTRGHVTVAGEDVRTFDKSEWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVSKEDVIKAAKAANAHDFILSLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNQLMKGRTTLVIAHRLSTVQNAHQIALCSDGKIAELGTHYELLAKKGQYASLVGTQRLAFE 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1907 730 Gene3D - 484 727 IPR027417 -
Lele08g1907 730 ProSitePatterns ABC transporters family signature. 627 641 IPR017871 GO:0005524|GO:0016887
Lele08g1907 730 MobiDBLite consensus disorder prediction 77 98 - -
Lele08g1907 730 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 97 728 - -
Lele08g1907 730 CDD ABC_MTABC3_MDL1_MDL2 488 725 - -
Lele08g1907 730 Pfam ABC transporter transmembrane region 122 236 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele08g1907 730 Pfam ABC transporter transmembrane region 299 396 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele08g1907 730 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 486 724 IPR003439 GO:0005524
Lele08g1907 730 SUPERFAMILY ABC transporter transmembrane region 110 423 IPR036640 GO:0005524|GO:0016020
Lele08g1907 730 Gene3D ABC transporter type 1, transmembrane domain 101 238 IPR036640 GO:0005524|GO:0016020
Lele08g1907 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 725 IPR027417 -
Lele08g1907 730 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 484 728 - -
Lele08g1907 730 Gene3D ABC transporter type 1, transmembrane domain 281 428 IPR036640 GO:0005524|GO:0016020
Lele08g1907 730 SMART AAA_5 513 707 IPR003593 -
Lele08g1907 730 Pfam ABC transporter 504 655 IPR003439 GO:0005524
Lele08g1907 730 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 122 409 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1907 Lele-ChrLele08 13453936 13460019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1907 483 730 Calmodulin-binding Proteins AT2G36910 54.762 3.14e-74 260