Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1872 ATGCCTTCTCTTCCTGCCTCTGATATTGCTCATTCTGAGACTCCCAAAGATAAGAAGGAGAAGAAGAAGAAGATGAAGAACGAGGCTCTAATTGAAGACGGGGTTTCGGCGAAGAAGAAGAAGGAGAGCAAGAAGCGTAAAGCTTTGGATGTTGAGATGCCGGCGAGTGATGATGAGGTAAAGAGTGAGACGAGTTCCGAGTTGGTTGACCCTGATAGTGTTAAAGAGAAGAGGAAGAAGAAAAAGGCTAAGTTGGATGAACCAGAAGATCAAGAGGAAGAGGTTGAGAAGGAGAATCCTAATGCAATCTCAAACTTTAGGATCTCAGCGCCGTTGAGGGCCCAGTTGAAGAAGAAGGGGATTGAATCACTATTTCCTATTCAGGCTATGACTTTTGATACCATCCTCGACGGCTCTGATTTGGTTGGTAGGGCTCGCACTGGGCAGGGTAAAACTCTTGCCTTTGTGTTACCGATATTAGAGTCTTTAACAAATGGTCCTGCAAAAGCAGCGAGAAAGTCTGGATATGGAAGGGGTCCATGTGTTCTTGTGCTCTTACCTACTAGAGAATTGGCCAAACAGGTGTTTGCGGATTTTGAAGTCTATGGTGGGGCACTGGGATTGACCTCTTGCTGTGTATATGGTGGAGCTCCATATCAAGCACAAGAATTTAAACTCAAGAAGGGTGTTGATGTTGTTGTTGGAACTCCAGGGCGCATAAAAGACCATATAGTGAGGACTAATCTTGACCTGAGCCAACTCAAGTTCCGTGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTCGAAGATGTTGAACTCATCCTGGGTAAGGTAGAGGATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCGGACTGGGTTAAGAGTATTTCGAAGAAATTTCTGAAATCTGATAAAAAAACTGCTGACCTGGTGGGCAATGAGAAAATGAAAGCTAGCACTAATGTTAGGCATATTGTTCTCCCATGTTCTAGTGCTGCCAGGGCCCAACTTATTCCCGATGTTATCCGTTGCTATTGCAATGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTGAACTTGCAGGGCTGTTGCCTGGTGCACGAGCTCTGCATGGTGATATACAGCAGTCACAACGTGAGGTTACTTTGGCTGGTTTCAGGGCTGGGAAGTTTACCACATTAGTGGCCACTAATGTGGCAGCCCGTGGTTTGGACATTAATGATGTTCAGTTAATTATCCAGTGTGAACCCCCTCGTGATGTAGAAGACTATATCCATCGATCTGGGCGCACTGGAAGAGCAGGTAATACTGGAGTTGCTGTTATGCTTTATGATCCAAGAAGGTCAAATATATCAAAAATAGAAAGAGAATCTGGTGTGAAATTTGAACACATATCTGCTCCCCAGTCTGCTGATATTGCAAAAGCTGTTGGTGGAGATGCTGCTAAAATGATTACCCAAGTATCTGATAGTGTCATCCCTGCATTCAAATCTGCTGCGGAGGATCTTTTAAACAATTCAGGCTTGACAGCTACCGAATTACTTGCAAAAGCTCTTGCCAAGACTATTGGTTATACGGAGATAAAGAAAAGATCATTACTCAATTCCATGGAGAACCATGTCACATTACTTCTTGAGATTGGAAGACCCGTCTACACCCCTTCATTTGCATTTGGAATTTTGAGGAGATTCTTGCCTCAGGAGAAGGTTGACTCAGTGAAGGGTCTTACTCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTTGCAGCTGAAGACTTAGATACCTTCCTTACTGGTCAGGAAAATGCTGCTAATGTAAGTTTAGAAGTAGTGGAAGCATTGCCAAGTTTGCAAGAAAGAGACCAATCGAGAGGTAGATTTGGCAGTGGTTGGGGTGGTGGGGGTCGTGGCGGCGGCAATAACAGGTTTTCTGGTGGAAGGGGCGGTGGCAGATTTTCTAATGATAGAAATGGTAGGTTTTCGAATAATAGAGGTGGGAGAGGGCGTGGCAATGGGGCAAAGAGGAGGTGA 2067 0.4465 MPSLPASDIAHSETPKDKKEKKKKMKNEALIEDGVSAKKKKESKKRKALDVEMPASDDEVKSETSSELVDPDSVKEKRKKKKAKLDEPEDQEEEVEKENPNAISNFRISAPLRAQLKKKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKAARKSGYGRGPCVLVLLPTRELAKQVFADFEVYGGALGLTSCCVYGGAPYQAQEFKLKKGVDVVVGTPGRIKDHIVRTNLDLSQLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPDWVKSISKKFLKSDKKTADLVGNEKMKASTNVRHIVLPCSSAARAQLIPDVIRCYCNGGRTIIFTETKESASELAGLLPGARALHGDIQQSQREVTLAGFRAGKFTTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHISAPQSADIAKAVGGDAAKMITQVSDSVIPAFKSAAEDLLNNSGLTATELLAKALAKTIGYTEIKKRSLLNSMENHVTLLLEIGRPVYTPSFAFGILRRFLPQEKVDSVKGLTLTADGNGAVFDVAAEDLDTFLTGQENAANVSLEVVEALPSLQERDQSRGRFGSGWGGGGRGGGNNRFSGGRGGGRFSNDRNGRFSNNRGGRGRGNGAKRR 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1872 688 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 314 IPR014001 -
Lele08g1872 688 CDD GUCT_RH7_like 542 627 - -
Lele08g1872 688 MobiDBLite consensus disorder prediction 11 88 - -
Lele08g1872 688 Pfam Helicase conserved C-terminal domain 354 446 IPR001650 -
Lele08g1872 688 SUPERFAMILY RNA-binding domain, RBD 539 622 IPR035979 GO:0003676
Lele08g1872 688 Gene3D - 324 553 IPR027417 -
Lele08g1872 688 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 69 501 - -
Lele08g1872 688 FunFam DEAD-box ATP-dependent RNA helicase 7 552 624 - -
Lele08g1872 688 SMART helicmild6 369 446 IPR001650 -
Lele08g1872 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 458 IPR027417 -
Lele08g1872 688 MobiDBLite consensus disorder prediction 634 688 - -
Lele08g1872 688 CDD DEADc 112 309 - -
Lele08g1872 688 SMART ultradead3 120 332 IPR014001 -
Lele08g1872 688 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 258 266 IPR000629 -
Lele08g1872 688 Pfam GUCT (NUC152) domain 535 630 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lele08g1872 688 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 485 IPR001650 -
Lele08g1872 688 MobiDBLite consensus disorder prediction 1 100 - -
Lele08g1872 688 CDD SF2_C_DEAD 329 455 - -
Lele08g1872 688 Pfam DEAD/DEAH box helicase 125 302 IPR011545 GO:0003676|GO:0005524
Lele08g1872 688 Gene3D - 554 624 - -
Lele08g1872 688 Gene3D - 54 314 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1872 Lele-ChrLele08 13088622 13093076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1872 138 452 Eukaryotic Initiation Factors Gene Family AT1G72730 32.602 6.35e-41 152