Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1839 ATGCATAGTCACTATATTGAGATCAAACCTGGTCGCAACACTCTTCACTTTTCATCAAGTGACTCCACAAGGGGCAATGCCAGCATGCCTGCCATGAAGAAGAATTCTGAGCAGACTCGGTTAGGATTTGTATTCAACAAGTTGGTGAATGAGATAGGAGATCCTGTTGATTTTGAACTTCCAGAATGGTTTAATAAGTGGAAGACAGTGTCATATGTCTCTATAAAGCGCAGTATCCTTTATATATATGTTACAAAGAAGGTAAAGAGAAGGCTTGATGATGACGGCATATTCTGTTCCTGTACTCCTTCCCCTGGGTCTTCTACTGTCTGTGGTAAATATTGCCACTGTGGGATGCTTATGTCTAGCTGCTCTTCAGGCTGTAAATGTGGGAGTTCTTGTCTCAATAAACCATTTCAGCATCGACCTACAAAAAAGATGAAATTGGTTCAGACTGAGAAATGTGGTTCTGGAATCGTGGCGGATGAAGATATCAAGCAAGGGGACTTTGTAATTGAATATGTTGGAGAAGTCATTGATGACAAAACATGTGAAGAAAGGCTTTGGAATATGAAACATCGTGGGGAGACAAACTTCTACTTATGTGAAATTAACAGAGATATGGTGATTGATGCAACATATAAGGGGAACAAATCAAGATATATAAATCATAGTTGCTGCCCCAATACGGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGTGACATAAGGAAGGGCGAGCATCTTACTTATGATTATCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCATTGTGGTGCTGCTGAGTGCAAGCGTAAGTTGGGGGTCCGACCTACCAAACCTAAAACATCTTCAGATGCTGCACTAAAATTAGTCGCATATCAGGTTTATCAGAATGGAGGTTTGCATATGGGACATTCTCATGCTATCGGTGTACCAAAGTACTCTCACAATTGCATTGGAGAAGTTGTTATGATAAATCACCCCACAAAAGAGAGGTGTTTTGGGATTATAAAGCGGTTCGATAAATATTGCAAAAAACACACTATTATGTTTGAAGATGGTGATGTTGATTCTATCGACTTATCAGAAGTAGATTGGGAACTTGTGAGATTGTGA 1146 0.3962 MHSHYIEIKPGRNTLHFSSSDSTRGNASMPAMKKNSEQTRLGFVFNKLVNEIGDPVDFELPEWFNKWKTVSYVSIKRSILYIYVTKKVKRRLDDDGIFCSCTPSPGSSTVCGKYCHCGMLMSSCSSGCKCGSSCLNKPFQHRPTKKMKLVQTEKCGSGIVADEDIKQGDFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIRKGEHLTYDYQFVQFGADQDCHCGAAECKRKLGVRPTKPKTSSDAALKLVAYQVYQNGGLHMGHSHAIGVPKYSHNCIGEVVMINHPTKERCFGIIKRFDKYCKKHTIMFEDGDVDSIDLSEVDWELVRL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1839 381 Pfam SET domain 156 261 IPR001214 GO:0005515
Lele08g1839 381 CDD SET_ASHR3-like 146 284 - -
Lele08g1839 381 ProSiteProfiles Post-SET domain profile. 268 284 IPR003616 -
Lele08g1839 381 SMART shorttest3 94 144 IPR006560 GO:0005634|GO:0018024
Lele08g1839 381 SMART PostSET_3 268 284 IPR003616 -
Lele08g1839 381 FunFam Histone-lysine N-methyltransferase 58 300 - -
Lele08g1839 381 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 108 336 IPR025787 -
Lele08g1839 381 MobiDBLite consensus disorder prediction 9 33 - -
Lele08g1839 381 SUPERFAMILY SET domain 69 280 IPR046341 -
Lele08g1839 381 ProSiteProfiles SET domain profile. 145 262 IPR001214 GO:0005515
Lele08g1839 381 MobiDBLite consensus disorder prediction 13 33 - -
Lele08g1839 381 ProSiteProfiles AWS domain profile. 94 143 IPR006560 GO:0005634|GO:0018024
Lele08g1839 381 SMART set_7 145 268 IPR001214 GO:0005515
Lele08g1839 381 PANTHER SET DOMAIN PROTEINS 57 299 - -
Lele08g1839 381 Gene3D SET domain 62 301 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1839 Lele-ChrLele08 12781526 12786005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1839 118 280 C2H2 Transcription Factor Family AT2G23740 33.880 2.87e-22 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele08g1839 SET 7.7e-20 No_clan