Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1838 ATGGACTTCTGGGATCGCCTCTGCAAGACACTTGGAGTTAGAAAAGTTAGCGTGATGGATGTGTCAAAGAAGCATGGGTTGGAGTATCGGCTGCTCCATGCTATTACAAAAGGACATCCTTGGTATGGTGATTGGGGTTATCAATTTGGTTCTGGAAAAGTGGTCCTTGGTGCAATGGTGAATACCCGATGCAATCCTGTTACTGGTGCTTTTGAGTACAGACTAGTGACAGGGAACAATTCTCTCCATGGAAATGCAAGCAATATTTCTTCAGGCCTAAAGTATCCATCTGAAGTGACTCTTCTACATGACTTGAGATACTTGTATAATTCTCTTCTTCATCCTCAGATGATGTTGAACTATGATCCAGAGGAGACAAGGGCAATGGCCATGAGCTCTGCTCAGAAACTTATTGACTGCAAGCAGTTTTTAAAGGACTTTAGACCTGAGATGATGCCGTTGACAAACCCGTCTAAGATACGCTTCTCATGTCAAATAGAACTAGAAGATGAATCTGAAGATGTCACCGCTCACCTTCCACCAGAATTAGTTATCCTCCCTGTAAATGCCACCGTATCTGACCTCAAGATTGAAGCGGAAAATTCCTTTCAAGATGTATATGTCATGTTCAGAAGACTTCAAACTGAGGAGCTACTTGGCTACAATGTTGATGATTCCTCCCCGGTCAAGCTCTTGTCAGGATCTATCATGGATGCAGTCCGGCTGCGAGGAAGATGCACTGGCAAGAATGGGTTGAGCCAATTCCAAATGGAACGGGGTTTTGAGAGGTGGACCATGGATTGCAGCTGTGGGGCGAATGACGATGATGGAGAGAGAATGTTGGCTTGTGATATATGTGGAGTGTGGAGACACACAAGGTGTTGTGATATTCATGATGCAGATCCTGTTCCTGCACGGTTTGTTTGTCCAAGATGCCAAAACTGTGATTCCAAACCCAAATCTAATGGGGATGAGATTGTGAATGATATTATGACCACTAAGAACTGCTTTGAAAACTGCATGCTGGTGCCATCTGATGTTCGTTGA 1047 0.4413 MDFWDRLCKTLGVRKVSVMDVSKKHGLEYRLLHAITKGHPWYGDWGYQFGSGKVVLGAMVNTRCNPVTGAFEYRLVTGNNSLHGNASNISSGLKYPSEVTLLHDLRYLYNSLLHPQMMLNYDPEETRAMAMSSAQKLIDCKQFLKDFRPEMMPLTNPSKIRFSCQIELEDESEDVTAHLPPELVILPVNATVSDLKIEAENSFQDVYVMFRRLQTEELLGYNVDDSSPVKLLSGSIMDAVRLRGRCTGKNGLSQFQMERGFERWTMDCSCGANDDDGERMLACDICGVWRHTRCCDIHDADPVPARFVCPRCQNCDSKPKSNGDEIVNDIMTTKNCFENCMLVPSDVR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1838 348 CDD PHD_MMD1_like 267 312 - -
Lele08g1838 348 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 52 - -
Lele08g1838 348 SUPERFAMILY FYVE/PHD zinc finger 258 314 IPR011011 -
Lele08g1838 348 SMART PHD_3 267 313 IPR001965 -
Lele08g1838 348 Pfam PHD-finger 268 315 IPR019787 -
Lele08g1838 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 318 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1838 Lele-ChrLele08 12772629 12774663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1838 1 52 PHD Transcription Factor Family AT5G22260 59.615 1.74e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele08g1838 PHD 8.4e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1998 05 14245782 14250774 Lele08g1838 08 12772629 12774663 hybridization
Lele06g1838 06 12917772 12918683 Lele08g1838 08 12772629 12774663 hybridization