Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1835 ATGGAGTCTGCTAGAAATGTTGATATTGATCATGAAAAGAGGCCAAGCATGGAGGAGCTTTATGGTCCAGAGAAGAAGAAGAAGAAGACGATAATTATAAGGTACAAAGAATGCATGAAGAACCATGCAGCTTCAATAGGAGGGAATGCAACAGATGGTTGTGGTGAGTTCATGGCTTCAGGAGAAGAAGGCACACCTGAATCTCTCAAATGCTCAGCCTGCAAATGCCACAGAAACTTCCACAGAAAACACTTTGATGAATCTGATGAAGATTCTGATGATGATACCCCTAACTCTTCTCCATATTATGATTCTCGTCATCTTCATCTTCCAAATAATAATGATGCTGATGCTGATGATCATCATCATCATCATCATCAGGTCATGATCAAACCCTTGTTGACCCATGATTTGTGTCTCTCAAGTTATAATAATAAAAGTTGTTCAGATCATGAGTCTGATGAGAAGAGGAAGAGGTTCAGGACCAAGTTCAGTGAAGAGCAGAAGGAGAAGATGCTGAGATTTGCAGAGAAAGTTGGGTGGAGGATGCTGAAGGTGGATGAATCCATGGTTCACCAGTTTTGTGAAGAAGCTGGAATCAAGAGAAGAGTGCTCAAAGTTTGGATGCACAATAACAAAAACAACTTTGCCAAGAGAAAAAACCTCATATACCCAAGCTGA 681 0.4053 MESARNVDIDHEKRPSMEELYGPEKKKKKTIIIRYKECMKNHAASIGGNATDGCGEFMASGEEGTPESLKCSACKCHRNFHRKHFDESDEDSDDDTPNSSPYYDSRHLHLPNNNDADADDHHHHHHQVMIKPLLTHDLCLSSYNNKSCSDHESDEKRKRFRTKFSEEQKEKMLRFAEKVGWRMLKVDESMVHQFCEEAGIKRRVLKVWMHNNKNNFAKRKNLIYPS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1835 226 MobiDBLite consensus disorder prediction 110 126 - -
Lele08g1835 226 FunFam Zinc-finger homeodomain protein 2 144 218 - -
Lele08g1835 226 Pfam ZF-HD protein dimerisation region 33 84 IPR006456 -
Lele08g1835 226 MobiDBLite consensus disorder prediction 1 23 - -
Lele08g1835 226 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 34 84 IPR006456 -
Lele08g1835 226 MobiDBLite consensus disorder prediction 85 127 - -
Lele08g1835 226 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 215 - -
Lele08g1835 226 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 35 84 IPR006456 -
Lele08g1835 226 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 157 214 IPR006455 -
Lele08g1835 226 Gene3D - 141 218 - -
Lele08g1835 226 SUPERFAMILY Homeodomain-like 143 218 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1835 Lele-ChrLele08 12746867 12747547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1835 26 221 ZF-HD Transcription Factor Family AT2G02540 43.946 2.01e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele08g1835 ZF-HD_dimer 7.8e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1835 08 12746867 12747547 Lele46g0342 46 2316553 2319522 CCT
Lele08g1835 08 12746867 12747547 Lele48g1137 48 16015042 16018391 CCT
Lele05g1996 05 14216127 14216807 Lele08g1835 08 12746867 12747547 hybridization
Lele06g1835 06 12892175 12892855 Lele08g1835 08 12746867 12747547 hybridization