Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1833 ATGGCCACCTCCAGGCGGCTTAGGGCATTCAAGCGATGGATGGCATCCCGGGGCTTCGAAATCAGCGATGGCCTCGAGTTCGTAGACGATCCCGAAAATGGGATTGTGGTGAGAGCTTTGTGCCAATTGAAGGAAGGCGATGTTGTTGCCAAAATACCGAAGGATGCTTGCCTGACGATTAAGACTAGTGGGGCGAGTCAAATGATTGAAGATGCTGATTTGGATGGTAATCTGGGACTAGCAGTGGCTCTGATGTATGAGAGAAGCTTGGGTGAGGAGTCACCATGGGCTGGCTACCTTCAGGTTTTGCCTCACCAAGAATGCCTGCCTTTGGTGTGGACTCTGAATGAAGTAAACGAGCTTTTGATTGGAACTGAGCTACACAAGATAATACAAGAGGACAAAGCTCTTATGTATGAGGACTGGAAAGAGAATATTCTACCCGTCTTGGATTTTTCACCTTCAAAGCTTGACCCGAAATCTTTTGGTGTAGAAGAATATTTTGCTGCAAGAAGTCTTATTGCTTCGCGATCTTTTGAGATAGATGATTACCATGGCTCTGGCATGGTTCCCTTGGCAGACCTATTCAATCATAAAACAGATGCTGAGGATGTGCATTTCACGGCAATACCTTCAAACAATGAATCTGACGATGATGTTGATGGAAATGAGCGTGTAACTGATGAAGAAGAATTGGCTAAAAATTCTTGTATGGATGAGACTGAGTTGGATACTGCACTTATTGAGAAATGCAGTGGTGGTGACTCGGAGTCATCCTCGGTTGTGGGAGATGATATTTCAATGTTGGAGATGATTATGATAAAAGATGTCAGTGTTGGAGCTGAGGTATTTAACACTTATGGGTCAATGGGTAATGCTGCTTTACTTCATAGATATGGATTTACTGAGCAAGATAACTCCTATGATATTGTGAACATTGATTTGGAACTTGTTCTTCAGTGGTGTTCTTCTCTGTTTTCAGCTCGATACACTCGAGCAAGAGTCTCTCTCTGGAGAAGGCTGGGTCATTCTGCATGTGTCAGCCAAAACTCGGAATATTTCGAGATATCGTCTAATGGAGAGCCACAGATTGAACTACTGATTTTATTATACATTATGTTATTAGCAGAAGATGCGTACCATAAGTTAGACTTATTGGTGTCGATTGCAGGAAATATTCATGAATCAAGTGAAACTTCTCTTTCAGGAGAATGCAATATCTTGACAAAGAAAGCATCTGATTTGAGTAAGGAATCATTGCTGACTAGAAAAGTTTGTGATGCTTTGTTGTCTGTTACTGATATGCGTGGAAGTCTCTATGGTCTGAACTCAATAGAAGATGATATTGAGGCATTAGGGAGGTGTAACTGTGTTAGAGAAAGAAAGCTGTTTCATTCTTTGGTGCTGCGCATTAGTGAAAGGAAGATCCTTGTAAAGCTCAGAAATTATGCTGCCCAGACAATTAGAAATGGTAAGCGAAATTCTGCAAGGAAGAAAATGAAAAGCTAA 1509 0.4175 MATSRRLRAFKRWMASRGFEISDGLEFVDDPENGIVVRALCQLKEGDVVAKIPKDACLTIKTSGASQMIEDADLDGNLGLAVALMYERSLGEESPWAGYLQVLPHQECLPLVWTLNEVNELLIGTELHKIIQEDKALMYEDWKENILPVLDFSPSKLDPKSFGVEEYFAARSLIASRSFEIDDYHGSGMVPLADLFNHKTDAEDVHFTAIPSNNESDDDVDGNERVTDEEELAKNSCMDETELDTALIEKCSGGDSESSSVVGDDISMLEMIMIKDVSVGAEVFNTYGSMGNAALLHRYGFTEQDNSYDIVNIDLELVLQWCSSLFSARYTRARVSLWRRLGHSACVSQNSEYFEISSNGEPQIELLILLYIMLLAEDAYHKLDLLVSIAGNIHESSETSLSGECNILTKKASDLSKESLLTRKVCDALLSVTDMRGSLYGLNSIEDDIEALGRCNCVRERKLFHSLVLRISERKILVKLRNYAAQTIRNGKRNSARKKMKS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1833 502 SUPERFAMILY SET domain 4 209 IPR046341 -
Lele08g1833 502 Pfam SET domain 34 288 IPR001214 GO:0005515
Lele08g1833 502 CDD SET_LSMT 24 302 - -
Lele08g1833 502 ProSiteProfiles SET domain profile. 23 288 IPR001214 GO:0005515
Lele08g1833 502 Gene3D set domain protein methyltransferase, domain 1 5 236 - -
Lele08g1833 502 Gene3D set domain protein methyltransferase, domain 1 240 302 - -
Lele08g1833 502 SUPERFAMILY SET domain 268 307 IPR046341 -
Lele08g1833 502 PIRSF RMS1_SET 1 488 IPR011383 GO:0016279|GO:0018026
Lele08g1833 502 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1833 Lele-ChrLele08 12730066 12733432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1833 1 500 NAC Transcription Factor Family AT3G56570 58.601 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele08g1833 SET 6e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1832 06 12874452 12877786 Lele08g1833 08 12730066 12733432 hybridization