Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1830 ATGGAGAATGAAAATTATGTGAATCGTGGCGATGATGTGAATGACATAGAAAACGAAGGTCCATTGGATGGGAAGGAATATGGGAGATACTGGTCAGAGTTTTCTGAAAGAAATATGACATACACAGAGCCACTTCTGGTGAAGAGGACTAACACCACCTCGCAGATCGCCATAGTTGGTGCCAACCTTAGCCCCATCGAAAGCCTTGATTATGAGATTTTTGAGAATGAAATGTTTAAGCAGGACTGGAGATCAAGGAGCAAGATTCAGATCTTCCAGTATGTGATACTTAAGTGGGGATTTGCTGCTCTTATTGGATTAGGCACTGGGCTACTTGGCTTCCTCAATAATATTGCTGTGGAGAATATAGCTGGTTTCAAGCTGCTTCTAGTAACCAACCTCATGTCTTCACACAGATATATTCTAGCATTTGTGGCATTAGCTGGTTGCAATATAGGCTTAGCAGCGGCAGCTGGATCTCTTTGTGCTTTCATTGCTCCCGCAGCAGCAGGCTCTGGAATTCCTGAGGTGAAAGCATATCTCAATGGTATTGATGCTCACAGTATACTGGCTCCGACCACTCTTTTTGTGAAGGTTTTTGGTGCCATCCTAGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAGGGGCCTATGGTACATACAGGTGCATGCATTGCTTCCTTGTTAGGGCAGGGTGGATCCCACAAGTATCGCTTAACTTGGACCTGGCTAAGGTATTTTAAAAATGATCGGGACCGACGGGACATGATTACTTGTGGTGCTGCAGCTGGTGTTGCTGCTGCATTTCGTGCTCCTGTGGGTGGCGTTCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGTGCTCTCCTTTGGAGGACATTTTTCACTACAGCAGTAGTTGCAATTGTTTTGAGAGCCGGAATTCAGTACTGTGCCACTGGAAAATGTGGGCTATTTGGTGAAGGTGGTTTGATAATGTATGATGTCAGTGCAGCCAAAGTATCATACAATGGCGCTGATATACTAGCAGTATTACTCTTAGGAACACTCGGAGGCATTCTTGGAAGCATATATAATTACTTTGTGGATAAGGTTGTTCGTACATATAGCATCCTGAATGAAAAAGGTCCAGGTTTCAAAATTCTCATTGTTGTCACAATTGCTTTTGTGACATCATGTTGTGCTTACGGCCTACCATGGTTGACAACTTGCATCCCCTGTCCTGATGATCCGACAGTGAGCTGTCCCACCATTGATGAGTCTGGAAACTACAAGAACTTTCAATGTCAACCGGGATATTACAATGATCTCGCTTCTCTTTTTCTAAACACCAACGATGATGCTATTCGCAACCTGTTCAGCACCAGGACTTTCAAAGAATTCCACATCTCCAGTCTCTTTATCTTCTTTGTAACTATTTACTTCCTTGGCGTAGTCACATATGGTATTGCTATTCCATCCGGCCTTTTCATTCCTGTGATATTGGCGGGTGCTGCATATGGCCGGCTTGTAGGGAGACTATTTGAGTCAATTTCAAAACTTGATGCTGGATTATACGCCCTCCTTGGAGCTGCCTCCTTCCTTGGCGGCACCATGAGAATGACGGTATCCCTTTGTGTTATATTGCTAGAACTCACCAATGATCTCTTGTTACTTCCTCTTGTGATGTTGGTCTTGTTAATCTCAAAAACTGTGGCTGATAGCTTCAACAAGGGTGTCTACGATCAAATACTGAAGATCAAAGGACTTCCATATATGGAGGCCCATGCCGAACCTTATATGAGGAATTTGGTGGCACGAGATGTTGTCTCTGGCCCACTAGTCACTTTCTCTGGCATCGAGAGGGTAAGGAATATACTAGATGCTCTGAAAACCACAGGGCATAATGGGTTTCCTGTCATCGATGAACCGCCGTTCTCAGATGCACCGGAATTGTGTGGGCTTGTTCTTAGGTCTCATCTGCTAGTGCTATTGAAGGGGAAGAACTTCTCAAAAGACAGGGTGCTTACAAGTCGAGACATCTTACAAAGAATTTCTGCATTAGATTTTGCAAAGGCAGGATCAGGGAAAGGAACCAAACTAGCGGATCTAGATATTGAAGAGGAAGAGATGGATATGTATGTTGATCTCCACCCCATTGCCAATGCATCCCCATACACGGTGGTTGAGACCATGTCACTTGCCAAAGCCGCTATTCTTTTCCGCCAACTTGGTCTTAGGCACATGTGTGTGGTCCCGAAGAGTCGAGGGAGGCCTCCAGTTGTTGGGATTCTAACACGCCATGACTTCATGGAGGAGCATGTCCATGGACTTTACCCTAATATGAAACCTCACAGGTGGACGGAGTGA 2355 0.451 MENENYVNRGDDVNDIENEGPLDGKEYGRYWSEFSERNMTYTEPLLVKRTNTTSQIAIVGANLSPIESLDYEIFENEMFKQDWRSRSKIQIFQYVILKWGFAALIGLGTGLLGFLNNIAVENIAGFKLLLVTNLMSSHRYILAFVALAGCNIGLAAAAGSLCAFIAPAAAGSGIPEVKAYLNGIDAHSILAPTTLFVKVFGAILGVSAGFVVGKEGPMVHTGACIASLLGQGGSHKYRLTWTWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAGIQYCATGKCGLFGEGGLIMYDVSAAKVSYNGADILAVLLLGTLGGILGSIYNYFVDKVVRTYSILNEKGPGFKILIVVTIAFVTSCCAYGLPWLTTCIPCPDDPTVSCPTIDESGNYKNFQCQPGYYNDLASLFLNTNDDAIRNLFSTRTFKEFHISSLFIFFVTIYFLGVVTYGIAIPSGLFIPVILAGAAYGRLVGRLFESISKLDAGLYALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLISKTVADSFNKGVYDQILKIKGLPYMEAHAEPYMRNLVARDVVSGPLVTFSGIERVRNILDALKTTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKNFSKDRVLTSRDILQRISALDFAKAGSGKGTKLADLDIEEEEMDMYVDLHPIANASPYTVVETMSLAKAAILFRQLGLRHMCVVPKSRGRPPVVGILTRHDFMEEHVHGLYPNMKPHRWTE 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1830 784 FunFam Chloride channel ClC3 90 408 - -
Lele08g1830 784 SUPERFAMILY CBS-domain pair 592 768 IPR046342 -
Lele08g1830 784 Gene3D - 588 772 IPR046342 -
Lele08g1830 784 PRINTS Chloride channel signature 537 556 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele08g1830 784 PRINTS Chloride channel signature 198 217 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele08g1830 784 PRINTS Chloride channel signature 487 507 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele08g1830 784 PRINTS Chloride channel signature 519 535 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele08g1830 784 PRINTS Chloride channel signature 262 281 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele08g1830 784 PRINTS Chloride channel signature 167 184 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele08g1830 784 PRINTS Chloride channel signature 575 589 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele08g1830 784 ProSiteProfiles CBS domain profile. 716 776 IPR000644 -
Lele08g1830 784 Pfam Voltage gated chloride channel 155 569 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele08g1830 784 CDD CBS_pair_voltage-gated_CLC_euk_bac 601 768 - -
Lele08g1830 784 SMART cbs_1 608 661 IPR000644 -
Lele08g1830 784 SMART cbs_1 719 770 IPR000644 -
Lele08g1830 784 Gene3D Clc chloride channel 90 587 - -
Lele08g1830 784 Pfam CBS domain 718 767 IPR000644 -
Lele08g1830 784 MobiDBLite consensus disorder prediction 1 21 - -
Lele08g1830 784 PRINTS Plant CLC chloride channel signature 72 80 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele08g1830 784 PRINTS Plant CLC chloride channel signature 439 455 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele08g1830 784 PRINTS Plant CLC chloride channel signature 283 291 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele08g1830 784 PRINTS Plant CLC chloride channel signature 297 307 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele08g1830 784 PRINTS Plant CLC chloride channel signature 315 322 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele08g1830 784 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 30 771 - -
Lele08g1830 784 SUPERFAMILY Clc chloride channel 76 590 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1830 Lele-ChrLele08 12695111 12702575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1830 12 779 Ion Channels AT5G49890 72.244 0.0 1105